Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SSUST1_RS09425 Genome accession   NC_017950
Coordinates   1886444..1886893 (-) Length   149 a.a.
NCBI ID   WP_014736499.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881444..1891893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS10200 (SSUST1_1934) - 1881598..1882119 (+) 522 WP_125176877.1 hypothetical protein -
  SSUST1_RS09410 (SSUST1_1935) - 1882116..1882745 (+) 630 WP_014736496.1 ABC transporter ATP-binding protein -
  SSUST1_RS09415 (SSUST1_1936) - 1882960..1884744 (-) 1785 WP_014736497.1 ABC transporter ATP-binding protein -
  SSUST1_RS09420 (SSUST1_1937) - 1884745..1886451 (-) 1707 WP_014736498.1 ABC transporter ATP-binding protein -
  SSUST1_RS09425 (SSUST1_1938) rcrR 1886444..1886893 (-) 450 WP_014736499.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SSUST1_RS09430 (SSUST1_1939) - 1887115..1888131 (+) 1017 WP_014736500.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SSUST1_RS09435 (SSUST1_1940) galU 1888176..1889075 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SSUST1_RS09440 (SSUST1_1941) - 1889093..1889770 (-) 678 WP_014736501.1 rhomboid family intramembrane serine protease -
  SSUST1_RS09445 (SSUST1_1942) - 1889754..1890296 (-) 543 WP_014736502.1 5-formyltetrahydrofolate cyclo-ligase -
  SSUST1_RS09450 (SSUST1_1943) - 1890337..1891464 (-) 1128 WP_014736503.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17539.02 Da        Isoelectric Point: 7.5184

>NTDB_id=43259 SSUST1_RS09425 WP_014736499.1 1886444..1886893(-) (rcrR) [Streptococcus suis ST1]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLVRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=43259 SSUST1_RS09425 WP_014736499.1 1886444..1886893(-) (rcrR) [Streptococcus suis ST1]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCGGAACGGTCTGAAGCTGAGACTTTTGTCAAAG
ATATTGAAGCGGAATTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGACAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGGTTAGACAAGTAGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416