Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HPL003_RS24445 Genome accession   NC_016641
Coordinates   5502234..5504084 (+) Length   616 a.a.
NCBI ID   WP_014282475.1    Uniprot ID   -
Organism   Paenibacillus terrae HPL-003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5497234..5509084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPL003_RS28005 - 5498040..5498282 (-) 243 WP_081473760.1 hypothetical protein -
  HPL003_RS24430 (HPL003_25355) - 5498370..5499845 (-) 1476 WP_014282472.1 PLP-dependent aminotransferase family protein -
  HPL003_RS24435 (HPL003_25360) - 5500024..5500431 (+) 408 WP_014282473.1 MarR family winged helix-turn-helix transcriptional regulator -
  HPL003_RS24440 (HPL003_25365) rcrP 5500478..5502241 (+) 1764 WP_014282474.1 ABC transporter ATP-binding protein Regulator
  HPL003_RS24445 (HPL003_25370) rcrQ 5502234..5504084 (+) 1851 WP_014282475.1 ABC transporter ATP-binding protein Regulator
  HPL003_RS24450 (HPL003_25375) - 5504343..5505563 (+) 1221 WP_014282476.1 PLP-dependent aminotransferase family protein -
  HPL003_RS24455 (HPL003_25380) - 5506316..5506882 (-) 567 WP_014282477.1 flavin reductase family protein -
  HPL003_RS24460 (HPL003_25385) - 5506948..5508063 (-) 1116 WP_014282478.1 Nif3-like dinuclear metal center hexameric protein -
  HPL003_RS24465 (HPL003_25390) - 5508039..5508800 (-) 762 WP_043922495.1 tRNA (adenine(22)-N(1))-methyltransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67838.54 Da        Isoelectric Point: 6.5073

>NTDB_id=43258 HPL003_RS24445 WP_014282475.1 5502234..5504084(+) (rcrQ) [Paenibacillus terrae HPL-003]
MDKNEHTTDSKHMKSKQQGPMGGGPAGGMGAGEKANNFKKTIKQLLSYGKAYVPMIILSMVLALAGSIFNVIGPGKLSDI
TNLIQQGIVTGIDVNAVQKIVLVLVVLYGLGLIFNYFQGFITVTVSQHLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALVMMLYTNWIMTITGIVATLIGFLLMTVIMKHSQKYFVAQQAELGQLNGHI
EETYAGHSVVKVYNGEQAAKEMFHGINDRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQHAITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTMKLDNAKGEVEFKHVRFGYNEDRMIIQDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPSSQLTRKNIHELFCMVLQDTWLFEGTIRENIVFSKEHVTD
EQVEAACRAVGLHSFLKTLPQGYDTMLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADMILVMKDGDIIETGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=43258 HPL003_RS24445 WP_014282475.1 5502234..5504084(+) (rcrQ) [Paenibacillus terrae HPL-003]
ATGGATAAGAATGAACACACCACAGACAGCAAGCATATGAAGTCGAAACAGCAAGGTCCCATGGGTGGAGGTCCTGCGGG
AGGCATGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATTAAGCAGCTCTTATCCTACGGTAAGGCCTATGTAC
CTATGATTATACTCTCTATGGTGCTGGCGCTGGCCGGTTCCATCTTCAACGTGATTGGTCCGGGTAAGCTCAGCGATATT
ACCAACCTGATCCAGCAAGGAATCGTAACAGGGATTGATGTGAATGCTGTCCAGAAGATTGTTCTTGTATTGGTAGTTTT
GTATGGTCTCGGTCTTATCTTTAATTATTTCCAAGGTTTCATTACGGTAACCGTGTCACAGCATCTTACAAAGAAGATGC
GGACAGAACTGTCCCGAAAAATCAATCATATGCCTTTGAAATATTTTGATGCTACGAGCTATGGTAATGTGCTTAGCCGT
GTGACCAACGATGTCGATACCATCGGACAAACGTTAAACAATAGTCTTGGTACGCTTGTCAGTGCGCTGGCAACCTTCGT
GGGCGCATTGGTTATGATGCTGTATACGAACTGGATCATGACCATTACCGGGATTGTAGCTACGCTGATCGGTTTTTTAC
TGATGACCGTGATTATGAAGCATTCACAAAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGCTCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAGCGTAGTCAAGGTATATAACGGAGAACAAGCAGCCAAGGAAATGTTCCATGGCATTAA
CGACCGCTTATATACAAATGCATGGAAATCCCAGTTCATGTCTGGTCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTCGCGGTCTGTGTCGTGGGCGCTTTGCTGGTGAACCAACATGCGATAACCATCGGAACAATTGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCACAATTGGCACAGGCAGCAACCAATCTGCAATCAGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCGGATGAGAGCGATAAGACCATGAAGCTGGACAACGCCA
AAGGGGAAGTCGAATTCAAACATGTCCGCTTCGGTTATAACGAAGACCGTATGATTATCCAAGACTTTTCCATGAAAGCT
GAAGCTGGCCAGAAAATTGCCATTGTTGGTCCGACAGGCGCCGGTAAAACGACACTCGTGAACTTGCTCATGCGGTTCTA
TGAACTGAACGGCGGGGAAATCTATATTGATGGAACCCCGAGCAGCCAATTAACACGTAAGAATATTCATGAATTATTCT
GTATGGTGCTGCAGGATACCTGGCTGTTTGAAGGAACGATCCGCGAGAATATTGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTAGAGGCCGCATGTAGAGCGGTGGGGCTGCACAGCTTCCTTAAAACACTGCCGCAGGGCTATGATACGATGTT
GGACGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAGTTGATTACCATTGCAAGAGCCATGATTGAAGATGCACCCATGC
TTATTCTAGATGAGGCCACAAGCTCCGTCGATACGCGTACAGAATTGCTGATTCAACAAGCGATGGACCGGCTGACTGTA
GGGAAAACCTCCTTTGTGATTGCCCACCGCCTCTCGACGATCAAGAACGCCGATATGATTCTGGTCATGAAGGACGGCGA
CATTATCGAAACAGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCCGATCTATATAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(56-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.286

93.669

0.518

Multiple sequence alignment