Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BVELS4_RS01770 Genome accession   NZ_CP050424
Coordinates   330377..330814 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain S4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 325377..335814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVELS4_RS01745 (BVELS4_00346) - 326396..327532 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  BVELS4_RS01750 (BVELS4_00347) - 327547..327981 (+) 435 WP_167340471.1 RDD family protein -
  BVELS4_RS01755 (BVELS4_00348) - 328054..328377 (+) 324 WP_007409357.1 YckD family protein -
  BVELS4_RS01760 (BVELS4_00349) - 328481..329917 (+) 1437 WP_025284208.1 family 1 glycosylhydrolase -
  BVELS4_RS01765 (BVELS4_00350) nin/comJ 329958..330356 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  BVELS4_RS01770 (BVELS4_00351) nucA/comI 330377..330814 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BVELS4_RS01775 (BVELS4_00352) hxlB 331172..331729 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  BVELS4_RS01780 (BVELS4_00353) hxlA 331726..332361 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  BVELS4_RS01785 (BVELS4_00354) - 332593..332955 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=432532 BVELS4_RS01770 WP_003156588.1 330377..330814(-) (nucA/comI) [Bacillus velezensis strain S4]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=432532 BVELS4_RS01770 WP_003156588.1 330377..330814(-) (nucA/comI) [Bacillus velezensis strain S4]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641