Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | HB367_RS04605 | Genome accession | NZ_CP050415 |
| Coordinates | 949165..949545 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836909.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain PM193665 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 944165..954545
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HB367_RS04575 (HB367_04575) | kdsB | 945068..945829 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| HB367_RS04580 (HB367_04580) | - | 945841..946821 (+) | 981 | WP_001075419.1 | DNA polymerase III subunit delta' | - |
| HB367_RS04585 (HB367_04585) | - | 946833..947174 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| HB367_RS04590 (HB367_04590) | - | 947192..947965 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| HB367_RS04595 (HB367_04595) | - | 948003..948611 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| HB367_RS04600 (HB367_04600) | - | 948621..949175 (+) | 555 | WP_000841372.1 | type II secretion system protein | - |
| HB367_RS04605 (HB367_04605) | xcpV | 949165..949545 (+) | 381 | WP_000836909.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| HB367_RS04610 (HB367_04610) | xcpW | 949545..950246 (+) | 702 | WP_000594588.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| HB367_RS04615 (HB367_04615) | gspK | 950246..951205 (+) | 960 | WP_001218621.1 | type II secretion system minor pseudopilin GspK | - |
| HB367_RS04620 (HB367_04620) | - | 951435..952031 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| HB367_RS04625 (HB367_04625) | ung | 952082..952795 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| HB367_RS04630 (HB367_04630) | - | 952792..953916 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| HB367_RS04635 (HB367_04635) | tadA | 953923..954426 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13991.24 Da Isoelectric Point: 9.8004
>NTDB_id=432436 HB367_RS04605 WP_000836909.1 949165..949545(+) (xcpV) [Acinetobacter baumannii strain PM193665]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=432436 HB367_RS04605 WP_000836909.1 949165..949545(+) (xcpV) [Acinetobacter baumannii strain PM193665]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |