Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HPL003_RS03080 Genome accession   NC_016641
Coordinates   633465..634418 (-) Length   317 a.a.
NCBI ID   WP_014278186.1    Uniprot ID   -
Organism   Paenibacillus terrae HPL-003     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628465..639418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPL003_RS03055 (HPL003_03100) - 628940..629851 (-) 912 WP_014278181.1 aldo/keto reductase -
  HPL003_RS03060 (HPL003_03105) - 629999..630742 (-) 744 WP_014278182.1 alpha/beta hydrolase -
  HPL003_RS03065 (HPL003_03110) - 630777..631760 (-) 984 WP_014278183.1 siderophore ABC transporter substrate-binding protein -
  HPL003_RS03070 (HPL003_03115) - 631773..632531 (-) 759 WP_014278184.1 ABC transporter ATP-binding protein -
  HPL003_RS03075 (HPL003_03120) - 632525..633475 (-) 951 WP_014278185.1 iron chelate uptake ABC transporter family permease subunit -
  HPL003_RS03080 (HPL003_03125) ceuB 633465..634418 (-) 954 WP_014278186.1 ABC transporter permease Machinery gene
  HPL003_RS03085 (HPL003_03130) - 634749..635426 (+) 678 WP_014278187.1 response regulator transcription factor -
  HPL003_RS03090 (HPL003_03135) - 635428..636345 (+) 918 WP_014278188.1 sensor histidine kinase -
  HPL003_RS03095 (HPL003_03140) - 636453..637130 (+) 678 WP_014278189.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34730.70 Da        Isoelectric Point: 9.9012

>NTDB_id=43231 HPL003_RS03080 WP_014278186.1 633465..634418(-) (ceuB) [Paenibacillus terrae HPL-003]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRLPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALAGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QSISSWMQGDFSLVMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTATLGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=43231 HPL003_RS03080 WP_014278186.1 633465..634418(-) (ceuB) [Paenibacillus terrae HPL-003]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
ACTCGATTTGTTCCACTTAACCAACGATCAGGCACAGGTGCTCCTGATTAGCAGACTACCGCGTTTGATCAGCATCATCA
TCGCAGGAGCGAGTATGAGTATCTGTGGTCTTATTATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCTACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCTGGATTTTGGACAAAGATGCT
GACGGCTTTCGGGTTTGCCCTGGCGGGGACACTGATTTTTATGAAAATACTGGACAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTGGTCGGTTTGATGTTCGGGGGCATTTTGAATTCGGTGACGACCTTTTTCGCCTATAAATACAATCTGATC
CAGAGCATTTCCTCGTGGATGCAGGGTGATTTTTCACTGGTGATGAGTGGTCGCTATGAGATGCTGTATCTTAGTGTTCC
GTTGGTTGCATTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGCGAGGATTTTGCGGCAAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCAGTCGTCATATTGACCGTGGGAACG
ATCCCTTTTCTAGGGCTGGTTGTACCGAATCTGGTCAGCATGTATATGGGCGATAATCTGAAAAAAAGTTTGGCCCACAC
CGCGACCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGGCGGGTCATCATTTATCCGTATGAAATCTCTGTAG
GGCTTACCGTGGGTGTGATCGGGAGTGCGTTGTTCTTGTATTTGCTGTTGAGGAGAAGGGCCTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.429

99.369

0.511

Multiple sequence alignment