Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HBN34_RS01740 Genome accession   NZ_CP050403
Coordinates   375094..375735 (+) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain VB2486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 370094..380735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBN34_RS01720 (HBN34_01720) - 370142..370474 (+) 333 WP_000169601.1 hypothetical protein -
  HBN34_RS01725 (HBN34_01725) - 370477..371301 (+) 825 WP_086245490.1 putative RNA methyltransferase -
  HBN34_RS01730 (HBN34_01730) ponA 371319..373874 (-) 2556 WP_000736663.1 penicillin-binding protein PBP1a -
  HBN34_RS01735 (HBN34_01735) pilM 374036..375094 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HBN34_RS01740 (HBN34_01740) pilN 375094..375735 (+) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  HBN34_RS01745 (HBN34_01745) pilO 375732..376472 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HBN34_RS01750 (HBN34_01750) pilP 376483..377010 (+) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  HBN34_RS01755 (HBN34_01755) pilQ 377073..379238 (+) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  HBN34_RS01760 (HBN34_01760) aroK 379250..379819 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=432293 HBN34_RS01740 WP_000201229.1 375094..375735(+) (pilN) [Acinetobacter baumannii strain VB2486]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=432293 HBN34_RS01740 WP_000201229.1 375094..375735(+) (pilN) [Acinetobacter baumannii strain VB2486]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714