Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HBM80_RS16720 Genome accession   NZ_CP050400
Coordinates   3370842..3371660 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain VB11737     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365842..3376660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBM80_RS16705 (HBM80_16705) pilE 3366059..3366484 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HBM80_RS16710 (HBM80_16710) pilY2 3366481..3366963 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  HBM80_RS16715 (HBM80_16715) pilY1 3366976..3370830 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  HBM80_RS16720 (HBM80_16720) pilX 3370842..3371660 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HBM80_RS16725 (HBM80_16725) pilW 3371657..3372658 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  HBM80_RS16730 (HBM80_16730) pilV 3372659..3373219 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  HBM80_RS16735 (HBM80_16735) fimU 3373213..3373686 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HBM80_RS16740 (HBM80_16740) ispH 3373856..3374806 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HBM80_RS16745 (HBM80_16745) gmk 3374929..3375558 (+) 630 WP_000015937.1 guanylate kinase -
  HBM80_RS16750 (HBM80_16750) rpoZ 3375631..3375909 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HBM80_RS16755 (HBM80_16755) - 3375948..3376077 (+) 130 Protein_3169 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=432229 HBM80_RS16720 WP_000149374.1 3370842..3371660(-) (pilX) [Acinetobacter baumannii strain VB11737]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=432229 HBM80_RS16720 WP_000149374.1 3370842..3371660(-) (pilX) [Acinetobacter baumannii strain VB11737]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993