Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   HBK89_RS01275 Genome accession   NZ_CP050388
Coordinates   260970..262124 (-) Length   384 a.a.
NCBI ID   WP_000755281.1    Uniprot ID   A0A059ZKS3
Organism   Acinetobacter baumannii strain VB473     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255970..267124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK89_RS01255 (HBK89_01255) - 257131..257781 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  HBK89_RS01260 (HBK89_01260) - 257887..258807 (+) 921 WP_002000451.1 DMT family transporter -
  HBK89_RS01265 (HBK89_01265) - 259199..259768 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  HBK89_RS01270 (HBK89_01270) dprA 259819..260949 (-) 1131 WP_002017176.1 DNA-processing protein DprA Machinery gene
  HBK89_RS01275 (HBK89_01275) tsaP 260970..262124 (-) 1155 WP_000755281.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HBK89_RS01280 (HBK89_01280) def 262247..262777 (+) 531 WP_001196539.1 peptide deformylase -
  HBK89_RS01285 (HBK89_01285) - 262814..263242 (+) 429 WP_000231985.1 DUF2946 family protein -
  HBK89_RS01290 (HBK89_01290) - 263314..265428 (+) 2115 WP_001120663.1 TonB-dependent copper receptor -
  HBK89_RS01295 (HBK89_01295) - 265482..265688 (+) 207 WP_000182542.1 hypothetical protein -
  HBK89_RS01300 (HBK89_01300) - 265758..266972 (-) 1215 WP_001177965.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42350.28 Da        Isoelectric Point: 8.5816

>NTDB_id=432106 HBK89_RS01275 WP_000755281.1 260970..262124(-) (tsaP) [Acinetobacter baumannii strain VB473]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=432106 HBK89_RS01275 WP_000755281.1 260970..262124(-) (tsaP) [Acinetobacter baumannii strain VB473]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGTGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACTAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZKS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.479

100

0.995