Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HBK86_RS16500 Genome accession   NZ_CP050385
Coordinates   3382836..3383477 (-) Length   213 a.a.
NCBI ID   WP_000201221.1    Uniprot ID   A0A5P1AXR1
Organism   Acinetobacter baumannii strain VB82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3377836..3388477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK86_RS16480 (HBK86_16480) aroK 3378752..3379321 (-) 570 WP_000643712.1 shikimate kinase AroK -
  HBK86_RS16485 (HBK86_16485) pilQ 3379333..3381498 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  HBK86_RS16490 (HBK86_16490) pilP 3381561..3382088 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  HBK86_RS16495 (HBK86_16495) pilO 3382099..3382839 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HBK86_RS16500 (HBK86_16500) pilN 3382836..3383477 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  HBK86_RS16505 (HBK86_16505) pilM 3383477..3384535 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HBK86_RS16510 (HBK86_16510) ponA 3384697..3387252 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  HBK86_RS16515 (HBK86_16515) - 3387270..3388094 (-) 825 WP_086245490.1 putative RNA methyltransferase -
  HBK86_RS16520 (HBK86_16520) - 3388097..3388429 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24023.34 Da        Isoelectric Point: 5.3968

>NTDB_id=432088 HBK86_RS16500 WP_000201221.1 3382836..3383477(-) (pilN) [Acinetobacter baumannii strain VB82]
MATINLLPWREELREQRKKQFITFCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=432088 HBK86_RS16500 WP_000201221.1 3382836..3383477(-) (pilN) [Acinetobacter baumannii strain VB82]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTTTGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1AXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

73.077

97.653

0.714