Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HMPREF0389_RS03310 Genome accession   NC_016630
Coordinates   745834..747195 (-) Length   453 a.a.
NCBI ID   WP_014262308.1    Uniprot ID   D6GU52
Organism   Filifactor alocis ATCC 35896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740834..752195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0389_RS03295 (HMPREF0389_01645) - 740988..742139 (-) 1152 WP_014262305.1 IS30 family transposase -
  HMPREF0389_RS03300 (HMPREF0389_01644) - 742069..743850 (+) 1782 WP_041250774.1 MAC/perforin domain-containing protein -
  HMPREF0389_RS03305 (HMPREF0389_01643) - 744230..745633 (-) 1404 WP_014262307.1 hypothetical protein -
  HMPREF0389_RS03310 (HMPREF0389_01642) radA 745834..747195 (-) 1362 WP_014262308.1 DNA repair protein RadA Machinery gene
  HMPREF0389_RS03315 (HMPREF0389_01641) - 747639..748775 (+) 1137 WP_014262309.1 sodium ion-translocating decarboxylase subunit beta -
  HMPREF0389_RS03320 - 749085..749483 (+) 399 WP_041250775.1 hypothetical protein -
  HMPREF0389_RS03325 (HMPREF0389_01639) - 749580..750272 (-) 693 WP_014262310.1 epoxyqueuosine reductase QueH -
  HMPREF0389_RS03330 (HMPREF0389_01638) - 750410..750787 (-) 378 WP_014262311.1 hypothetical protein -
  HMPREF0389_RS03335 (HMPREF0389_01637) - 751070..751525 (-) 456 WP_014262312.1 YehR family lipoprotein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50273.81 Da        Isoelectric Point: 7.6932

>NTDB_id=43204 HMPREF0389_RS03310 WP_014262308.1 745834..747195(-) (radA) [Filifactor alocis ATCC 35896]
MSKIKRVYICKECGNQTTSWYGICPNCHSYASLEEKEVKASELKKSKRTGKDSPSSLSMPLSKVEFQDERRFSTTIEELD
RVLGGGIVKGSLVLVGGEPGIGKSTLLLQVAHHISRQKKVLYFSGEESTQQIKLRAERLFDEDCDMYLCNSNELEQLESE
IESYHPDFVIVDSIQTIFSSELDSIQGSVSQVKEVTARLMELAKKKQISIFLVGHVTKEGYIAGPKVLEHLVDTVIYFEG
ERYHSYRMIRAVKNRFGSTNELGMFEMTNKGLVQILNPSAMLLSEKPQGESGSVIVATMEGSRPILVEVQALVSASNFSV
PRRTATGVDFNRVNMLLAVLEKKVGLKLQNQDVYINLTGGFQNNEPSIDLGIVLAVASSYKGTPMGEDTVVFGEVGLTGE
IRSVQNAGKRVAEAKKLGFQKVILPKNNLKESMTDGIELVGIRHVFELFRKTK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=43204 HMPREF0389_RS03310 WP_014262308.1 745834..747195(-) (radA) [Filifactor alocis ATCC 35896]
ATGAGCAAAATAAAAAGAGTATATATTTGTAAAGAATGTGGGAATCAAACGACATCTTGGTATGGAATTTGTCCCAATTG
TCATTCTTATGCATCCTTGGAGGAAAAAGAAGTAAAGGCAAGTGAACTTAAGAAAAGCAAGAGAACAGGTAAAGATTCCC
CTTCTTCTTTATCAATGCCATTATCTAAGGTGGAGTTTCAAGATGAAAGGAGATTTTCTACCACAATAGAAGAATTGGAC
AGAGTGTTAGGAGGAGGAATTGTAAAAGGTTCATTGGTTTTGGTTGGAGGAGAGCCTGGAATCGGAAAGTCAACGTTGTT
GTTGCAGGTAGCACATCATATCAGTAGACAAAAGAAAGTATTGTATTTTTCGGGTGAAGAGTCTACACAACAAATCAAAC
TTCGTGCAGAGCGACTTTTTGATGAAGACTGTGATATGTATTTATGTAACAGTAATGAATTGGAACAATTGGAATCAGAG
ATAGAATCCTATCATCCCGACTTTGTTATTGTAGATTCGATTCAAACCATTTTCTCCAGTGAGTTAGATTCTATTCAAGG
CTCTGTTTCTCAAGTAAAAGAAGTAACAGCTCGTTTGATGGAACTTGCAAAGAAAAAGCAAATCAGTATTTTTTTAGTAG
GGCATGTTACGAAAGAGGGATATATTGCAGGACCCAAGGTATTAGAGCATTTGGTGGATACGGTTATTTATTTTGAAGGC
GAACGATATCATTCCTATCGTATGATTCGTGCAGTCAAAAATCGTTTCGGCTCGACCAATGAACTTGGGATGTTTGAGAT
GACAAACAAAGGATTGGTACAGATATTAAATCCGTCTGCAATGTTATTGAGTGAAAAACCACAGGGAGAATCAGGGTCTG
TGATTGTAGCAACAATGGAGGGGAGTAGACCTATTTTGGTGGAAGTACAGGCATTGGTATCTGCAAGCAACTTCTCTGTT
CCAAGAAGAACAGCAACAGGAGTTGATTTTAACAGAGTAAATATGTTACTTGCTGTTCTTGAGAAAAAGGTTGGGTTGAA
ACTTCAGAATCAAGATGTTTATATCAATCTGACCGGAGGATTTCAAAACAATGAACCGTCCATTGATTTGGGAATTGTTT
TGGCAGTAGCATCTTCCTATAAAGGAACTCCGATGGGAGAAGATACCGTTGTGTTTGGAGAAGTGGGTTTGACCGGAGAA
ATCAGAAGCGTTCAGAATGCAGGTAAGCGGGTTGCTGAGGCGAAAAAACTGGGATTTCAAAAAGTAATTCTTCCAAAAAA
CAACTTGAAAGAAAGTATGACAGATGGAATTGAGTTAGTTGGAATCAGGCATGTTTTTGAACTATTTCGAAAAACAAAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-220)

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6GU52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

52.759

100

0.528
  radA Streptococcus pneumoniae D39

52.655

99.779

0.525
  radA Streptococcus pneumoniae R6

52.655

99.779

0.525
  radA Streptococcus pneumoniae Rx1

52.655

99.779

0.525
  radA Streptococcus mitis NCTC 12261

52.655

99.779

0.525
  radA Streptococcus pneumoniae TIGR4

52.655

99.779

0.525
  radA Bacillus subtilis subsp. subtilis str. 168

51.209

100

0.514

Multiple sequence alignment