Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxP   Type   Regulator
Locus tag   VFU_RS17150 Genome accession   NC_016628
Coordinates   377089..378186 (-) Length   365 a.a.
NCBI ID   WP_004726763.1    Uniprot ID   A0A0Q2SGB9
Organism   Vibrio furnissii NCTC 11218     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 372089..383186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS17130 (vfu_B00355) - 372643..373014 (+) 372 WP_014257415.1 YgiW/YdeI family stress tolerance OB fold protein -
  VFU_RS17135 (vfu_B00356) - 373166..373690 (+) 525 WP_004726759.1 hypothetical protein -
  VFU_RS17140 (vfu_B00357) - 373815..374495 (+) 681 WP_004726760.1 PilZ domain-containing protein -
  VFU_RS17145 (vfu_B00358) luxQ 374492..377068 (-) 2577 WP_014257416.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  VFU_RS17150 (vfu_B00359) luxP 377089..378186 (-) 1098 WP_004726763.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  VFU_RS17155 (vfu_B00360) - 378606..378896 (-) 291 WP_014257417.1 GIY-YIG nuclease family protein -
  VFU_RS17160 (vfu_B00361) - 378907..379542 (-) 636 WP_004726766.1 YceH family protein -
  VFU_RS17165 (vfu_B00362) - 379586..379783 (-) 198 WP_014257418.1 hypothetical protein -
  VFU_RS17170 (vfu_B00363) - 379973..380290 (+) 318 WP_004726770.1 DUF496 family protein -
  VFU_RS17175 (vfu_B00364) - 380416..381420 (-) 1005 WP_014257419.1 phage integrase -
  VFU_RS17180 (vfu_B00365) - 381748..382836 (+) 1089 WP_014257420.1 ParA family protein -

Sequence


Protein


Download         Length: 365 a.a.        Molecular weight: 41539.74 Da        Isoelectric Point: 5.2793

>NTDB_id=43184 VFU_RS17150 WP_004726763.1 377089..378186(-) (luxP) [Vibrio furnissii NCTC 11218]
MKKTLFLSLLLGFTPFASSYSSQVLNGYWHYQEFLNANPQQKALTESLSDAVRQSSQRLTVKQQTPVTISVVYPGQQISD
YWVRNIKAFEMRLEELGIEYQINQVFTRPNQDTRQQSLSLMEAVKNNTDYLIFTLDTTRHRKFIEHVLNSSPTKLILQNI
TTPVRDWDERQPMMYVGFDHELGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMESTGDYQLASSYYTKAT
QESGYEATVNIVKNDPDIKFIYACSTDVALGAAKALQALKREDIQVNGWGGGSAELEALDEGHLDVTVMRINDDTGIAMA
EAIKRDLEGLAVPVVYSGDFEIVTKDDQPKKIGLFKQRAFRYSDR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=43184 VFU_RS17150 WP_004726763.1 377089..378186(-) (luxP) [Vibrio furnissii NCTC 11218]
ATGAAGAAAACGCTTTTTCTTTCTCTTTTACTTGGTTTCACTCCTTTTGCCTCTTCGTATTCATCACAAGTGCTGAATGG
TTACTGGCATTATCAGGAATTTCTGAATGCCAATCCGCAACAAAAGGCACTGACTGAGTCGTTGTCTGATGCGGTGCGTC
AATCGTCTCAGCGGCTGACGGTCAAACAACAAACTCCGGTGACCATTTCGGTGGTTTATCCGGGGCAACAGATCTCCGAT
TACTGGGTGCGCAACATCAAAGCATTTGAAATGCGATTGGAAGAGTTAGGCATTGAATACCAGATTAATCAGGTGTTTAC
GCGCCCGAACCAAGACACTCGTCAACAAAGCTTGTCGTTGATGGAAGCGGTGAAGAACAACACGGATTATTTGATTTTCA
CGCTGGATACAACGCGCCACCGCAAGTTTATTGAACACGTTCTGAACTCGTCACCGACCAAATTGATTTTGCAGAATATC
ACCACGCCGGTTCGAGACTGGGATGAACGCCAGCCGATGATGTACGTTGGGTTTGACCATGAACTCGGTGCGCAGCAACT
CGCACAGTATTATCGCGAGCATGTGCCCAAAGGCAGCAAGTATTCGGTGCTGTATTTTTCTGAAGGGTACGTCAGCGATG
CGCGTGGCGACACTTTCATTCAGCAGATGGAAAGCACGGGCGATTACCAGCTGGCCTCGTCGTATTACACCAAAGCGACC
CAAGAAAGTGGCTATGAAGCCACCGTTAACATTGTCAAAAATGACCCGGATATTAAATTTATTTACGCCTGTTCCACCGA
TGTGGCACTGGGCGCAGCCAAGGCGCTACAAGCGTTAAAACGTGAAGATATTCAGGTGAATGGCTGGGGTGGCGGCTCGG
CAGAACTAGAAGCCTTGGATGAAGGTCATCTTGATGTTACTGTCATGAGAATCAATGATGATACCGGCATTGCGATGGCG
GAAGCGATCAAACGTGATTTGGAAGGTTTGGCCGTGCCCGTGGTGTATTCCGGTGACTTTGAGATCGTGACCAAAGACGA
TCAGCCGAAAAAAATTGGTTTGTTTAAGCAACGCGCCTTTCGTTATTCCGACCGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.411

100

0.704


Multiple sequence alignment