Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB730_RS27325 Genome accession   NZ_CP050332
Coordinates   5762269..5762826 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain DVT413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5757269..5767826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB730_RS27305 (HB730_27395) pilR 5758545..5759882 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  HB730_RS27310 (HB730_27400) thiO 5759928..5761022 (-) 1095 WP_031756968.1 glycine oxidase ThiO -
  HB730_RS27315 (HB730_27405) - 5761157..5761666 (+) 510 WP_009316266.1 Tfp pilus assembly protein FimT/FimU -
  HB730_RS27320 (HB730_27410) - 5761772..5762278 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  HB730_RS27325 (HB730_27415) pilV 5762269..5762826 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  HB730_RS27330 (HB730_27420) pilW 5762823..5763647 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HB730_RS27335 (HB730_27425) pilX 5763644..5764231 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  HB730_RS27340 (HB730_27430) pilY1 5764243..5767734 (+) 3492 WP_061194891.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=431757 HB730_RS27325 WP_003094697.1 5762269..5762826(+) (pilV) [Pseudomonas aeruginosa strain DVT413]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431757 HB730_RS27325 WP_003094697.1 5762269..5762826(+) (pilV) [Pseudomonas aeruginosa strain DVT413]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978