Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB731_RS24955 Genome accession   NZ_CP050331
Coordinates   5349983..5350540 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT414     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5344983..5355540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB731_RS24935 (HB731_24975) pilR 5346259..5347596 (+) 1338 Protein_4945 two-component system response regulator PilR -
  HB731_RS24940 (HB731_24980) thiO 5347642..5348736 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  HB731_RS24945 (HB731_24985) - 5348871..5349380 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  HB731_RS24950 (HB731_24990) - 5349486..5349992 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HB731_RS24955 (HB731_24995) pilV 5349983..5350540 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HB731_RS24960 (HB731_25000) pilW 5350537..5351361 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HB731_RS24965 (HB731_25005) pilX 5351358..5351945 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HB731_RS24970 (HB731_25010) pilY1 5351957..5355448 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=431723 HB731_RS24955 WP_003119423.1 5349983..5350540(+) (pilV) [Pseudomonas aeruginosa strain DVT414]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431723 HB731_RS24955 WP_003119423.1 5349983..5350540(+) (pilV) [Pseudomonas aeruginosa strain DVT414]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAATACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995