Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB739_RS08125 Genome accession   NZ_CP050326
Coordinates   1770073..1770630 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT423     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765073..1775630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB739_RS08110 (HB739_08140) pilY1 1765165..1768656 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  HB739_RS08115 (HB739_08145) pilX 1768668..1769255 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HB739_RS08120 (HB739_08150) pilW 1769252..1770076 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HB739_RS08125 (HB739_08155) pilV 1770073..1770630 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HB739_RS08130 (HB739_08160) - 1770621..1771127 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HB739_RS08135 (HB739_08165) - 1771233..1771742 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  HB739_RS08140 (HB739_08170) thiO 1771877..1772971 (+) 1095 WP_023087807.1 glycine oxidase ThiO -
  HB739_RS08145 (HB739_08175) pilR 1773017..1774354 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=431572 HB739_RS08125 WP_003119423.1 1770073..1770630(-) (pilV) [Pseudomonas aeruginosa strain DVT423]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431572 HB739_RS08125 WP_003119423.1 1770073..1770630(-) (pilV) [Pseudomonas aeruginosa strain DVT423]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995