Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB740_RS24835 Genome accession   NZ_CP050325
Coordinates   5335696..5336253 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5330696..5341253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB740_RS24815 (HB740_24855) pilR 5331975..5333312 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  HB740_RS24820 (HB740_24860) thiO 5333358..5334452 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  HB740_RS24825 (HB740_24865) - 5334587..5335096 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  HB740_RS24830 (HB740_24870) - 5335202..5335705 (+) 504 WP_174707919.1 Tfp pilus assembly protein FimT/FimU -
  HB740_RS24835 (HB740_24875) pilV 5335696..5336253 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HB740_RS24840 (HB740_24880) pilW 5336250..5337074 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  HB740_RS24845 (HB740_24885) pilX 5337071..5337658 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HB740_RS24850 (HB740_24890) pilY1 5337670..5341161 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=431553 HB740_RS24835 WP_003119423.1 5335696..5336253(+) (pilV) [Pseudomonas aeruginosa strain DVT425]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431553 HB740_RS24835 WP_003119423.1 5335696..5336253(+) (pilV) [Pseudomonas aeruginosa strain DVT425]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995