Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB742_RS24445 Genome accession   NZ_CP050324
Coordinates   5275871..5276428 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT427     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5270871..5281428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB742_RS24420 (HB742_24440) pilS 5270932..5272524 (+) 1593 WP_003119425.1 two-component system sensor histidine kinase PilS Regulator
  HB742_RS24425 (HB742_24445) - 5272539..5273484 (+) 946 Protein_4844 sigma-54-dependent transcriptional regulator -
  HB742_RS24430 (HB742_24450) thiO 5273530..5274624 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  HB742_RS24435 (HB742_24455) - 5274759..5275268 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  HB742_RS24440 (HB742_24460) - 5275374..5275880 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HB742_RS24445 (HB742_24465) pilV 5275871..5276428 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HB742_RS24450 (HB742_24470) pilW 5276425..5277249 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HB742_RS24455 (HB742_24475) pilX 5277246..5277833 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  HB742_RS24460 (HB742_24480) pilY1 5277845..5281336 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=431520 HB742_RS24445 WP_003119423.1 5275871..5276428(+) (pilV) [Pseudomonas aeruginosa strain DVT427]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431520 HB742_RS24445 WP_003119423.1 5275871..5276428(+) (pilV) [Pseudomonas aeruginosa strain DVT427]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995