Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IHV08_RS19430 Genome accession   NZ_CP062497
Coordinates   3748155..3749288 (-) Length   377 a.a.
NCBI ID   WP_042975504.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3743155..3754288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS19390 (IHV08_19390) ywnA 3743302..3743703 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  IHV08_RS19395 (IHV08_19395) ureC 3743838..3745547 (-) 1710 WP_003243090.1 urease subunit alpha -
  IHV08_RS19400 (IHV08_19400) ureB 3745544..3745918 (-) 375 WP_015251023.1 urease subunit beta -
  IHV08_RS19405 (IHV08_19405) ureA 3745915..3746232 (-) 318 WP_003227724.1 urease subunit gamma -
  IHV08_RS19410 (IHV08_19410) - 3746391..3746585 (-) 195 WP_119899878.1 hypothetical protein -
  IHV08_RS22005 - 3746878..3747046 (-) 169 Protein_3789 urea ABC transporter substrate-binding protein -
  IHV08_RS19420 (IHV08_19420) csbD 3747259..3747447 (-) 189 WP_003227718.1 stress response protein CsbD -
  IHV08_RS19425 (IHV08_19425) - 3747520..3747999 (-) 480 WP_003244390.1 hypothetical protein -
  IHV08_RS19430 (IHV08_19430) rapC 3748155..3749288 (-) 1134 WP_042975504.1 response regulator aspartate phosphatase RapB Regulator
  IHV08_RS19435 (IHV08_19435) moaA 3749480..3750505 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  IHV08_RS19440 (IHV08_19440) fdhD 3750521..3751309 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  IHV08_RS19445 (IHV08_19445) - 3751542..3751703 (-) 162 WP_192858067.1 hypothetical protein -
  IHV08_RS19450 (IHV08_19450) ywmD 3751798..3752472 (-) 675 WP_003243553.1 VWA domain-containing protein -
  IHV08_RS19455 (IHV08_19455) - 3752525..3752665 (-) 141 WP_014478246.1 hypothetical protein -
  IHV08_RS19460 (IHV08_19460) ywmC 3752796..3753479 (-) 684 WP_014478248.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45054.22 Da        Isoelectric Point: 4.8480

>NTDB_id=431497 IHV08_RS19430 WP_042975504.1 3748155..3749288(-) (rapC) [Bacillus subtilis strain CV16]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=431497 IHV08_RS19430 WP_042975504.1 3748155..3749288(-) (rapC) [Bacillus subtilis strain CV16]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAGTATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424