Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB744_RS07750 Genome accession   NZ_CP050323
Coordinates   1668359..1668916 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT429     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1663359..1673916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB744_RS07735 (HB744_07755) pilY1 1663451..1666942 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  HB744_RS07740 (HB744_07760) pilX 1666954..1667541 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HB744_RS07745 (HB744_07765) pilW 1667538..1668362 (-) 825 WP_009875846.1 type 4a pilus minor pilin PilW -
  HB744_RS07750 (HB744_07770) pilV 1668359..1668916 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HB744_RS07755 (HB744_07775) - 1668907..1669413 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HB744_RS07760 (HB744_07780) - 1669519..1670028 (-) 510 Protein_1530 GspH/FimT family pseudopilin -
  HB744_RS07765 (HB744_07785) thiO 1670163..1671257 (+) 1095 WP_003145981.1 glycine oxidase ThiO -
  HB744_RS07770 (HB744_07790) pilR 1671303..1672640 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=431472 HB744_RS07750 WP_003119423.1 1668359..1668916(-) (pilV) [Pseudomonas aeruginosa strain DVT429]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431472 HB744_RS07750 WP_003119423.1 1668359..1668916(-) (pilV) [Pseudomonas aeruginosa strain DVT429]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995