Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HB747_RS10395 Genome accession   NZ_CP050322
Coordinates   2271242..2271877 (+) Length   211 a.a.
NCBI ID   WP_174707264.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DVT729     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2266242..2276877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB747_RS10380 (HB747_10390) - 2266950..2268194 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  HB747_RS10385 (HB747_10395) - 2268282..2268815 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HB747_RS10390 (HB747_10400) - 2268946..2271170 (+) 2225 Protein_2053 DNA internalization-related competence protein ComEC/Rec2 -
  HB747_RS10395 (HB747_10405) exbB 2271242..2271877 (+) 636 WP_174707264.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HB747_RS10400 (HB747_10410) - 2271874..2272314 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  HB747_RS10405 (HB747_10415) lpxK 2272314..2273312 (+) 999 WP_023114520.1 tetraacyldisaccharide 4'-kinase -
  HB747_RS10410 (HB747_10420) - 2273350..2273535 (+) 186 WP_003091157.1 Trm112 family protein -
  HB747_RS10415 (HB747_10425) kdsB 2273535..2274299 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HB747_RS10420 (HB747_10430) - 2274299..2274763 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  HB747_RS10425 (HB747_10435) murB 2274760..2275779 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.03 Da        Isoelectric Point: 6.7278

>NTDB_id=431438 HB747_RS10395 WP_174707264.1 2271242..2271877(+) (exbB) [Pseudomonas aeruginosa strain DVT729]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALIATAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=431438 HB747_RS10395 WP_174707264.1 2271242..2271877(+) (exbB) [Pseudomonas aeruginosa strain DVT729]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGTGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCGCCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806