Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IHV08_RS09265 Genome accession   NZ_CP062497
Coordinates   1770922..1771353 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain CV16     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1765922..1776353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS09245 (IHV08_09245) spoVS 1766483..1766743 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  IHV08_RS09250 (IHV08_09250) tdh 1767009..1768052 (+) 1044 WP_181217077.1 L-threonine 3-dehydrogenase -
  IHV08_RS09255 (IHV08_09255) kbl 1768065..1769243 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  IHV08_RS09260 (IHV08_09260) miaB 1769391..1770920 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IHV08_RS09265 (IHV08_09265) ymcA 1770922..1771353 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  IHV08_RS09270 (IHV08_09270) cotE 1771615..1772160 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  IHV08_RS09275 (IHV08_09275) hexA 1772293..1774869 (+) 2577 WP_192858401.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=431432 IHV08_RS09265 WP_003231834.1 1770922..1771353(+) (ymcA) [Bacillus subtilis strain CV16]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=431432 IHV08_RS09265 WP_003231834.1 1770922..1771353(+) (ymcA) [Bacillus subtilis strain CV16]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1