Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IHV08_RS03960 Genome accession   NZ_CP062497
Coordinates   749721..750851 (+) Length   376 a.a.
NCBI ID   WP_192858293.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 744721..755851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS03945 (IHV08_03945) - 746543..747559 (+) 1017 WP_192858292.1 hypothetical protein -
  IHV08_RS03950 (IHV08_03950) - 747774..748211 (+) 438 WP_181216865.1 hypothetical protein -
  IHV08_RS03955 (IHV08_03955) - 748412..749572 (+) 1161 WP_181216866.1 lysozyme inhibitor LprI family protein -
  IHV08_RS03960 (IHV08_03960) rapC 749721..750851 (+) 1131 WP_192858293.1 response regulator aspartate phosphatase RapH Regulator
  IHV08_RS03965 (IHV08_03965) phrH 750841..751014 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  IHV08_RS03970 (IHV08_03970) yeeI 751174..751893 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IHV08_RS03975 (IHV08_03975) yeeK 752027..752467 (+) 441 WP_192858294.1 spore coat protein YeeK -
  IHV08_RS03980 (IHV08_03980) yezE 752582..753166 (+) 585 WP_015252623.1 TetR/AcrR family transcriptional regulator -
  IHV08_RS03985 (IHV08_03985) yesE 753245..753691 (+) 447 WP_192858295.1 nuclear transport factor 2 family protein -
  IHV08_RS03990 (IHV08_03990) yesF 753688..754553 (+) 866 Protein_741 NmrA family NAD(P)-binding protein -
  IHV08_RS03995 (IHV08_03995) cotJA 754680..754928 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  IHV08_RS04000 (IHV08_04000) cotJB 754912..755175 (+) 264 WP_003219491.1 spore coat protein CotJB -
  IHV08_RS04005 (IHV08_04005) cotJC 755190..755759 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43949.21 Da        Isoelectric Point: 5.8846

>NTDB_id=431385 IHV08_RS03960 WP_192858293.1 749721..750851(+) (rapC) [Bacillus subtilis strain CV16]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=431385 IHV08_RS03960 WP_192858293.1 749721..750851(+) (rapC) [Bacillus subtilis strain CV16]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAGCCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTTGAAGCCATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAATAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAATTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399