Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IHV08_RS02395 Genome accession   NZ_CP062497
Coordinates   467912..468346 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain CV16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462912..473346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS02365 (IHV08_02365) ydaD 463561..464421 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  IHV08_RS02370 (IHV08_02370) lyxE 464437..464940 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  IHV08_RS02375 (IHV08_02375) ydaF 465026..465577 (+) 552 WP_192858209.1 GNAT family protein -
  IHV08_RS02380 (IHV08_02380) ydaG 465655..466077 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  IHV08_RS02385 (IHV08_02385) amj 466583..467392 (+) 810 WP_061891247.1 lipid II flippase Amj -
  IHV08_RS02390 (IHV08_02390) ydzA 467437..467727 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  IHV08_RS02395 (IHV08_02395) lrpC 467912..468346 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IHV08_RS02400 (IHV08_02400) topB 468411..470594 (+) 2184 WP_076458431.1 DNA topoisomerase III -
  IHV08_RS02405 (IHV08_02405) ephJ 470797..471885 (+) 1089 WP_015715260.1 hypothetical protein -
  IHV08_RS02410 (IHV08_02410) epsK 471866..472717 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=431382 IHV08_RS02395 WP_003246585.1 467912..468346(+) (lrpC) [Bacillus subtilis strain CV16]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=431382 IHV08_RS02395 WP_003246585.1 467912..468346(+) (lrpC) [Bacillus subtilis strain CV16]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1