Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DSUI_RS11760 Genome accession   NC_016616
Coordinates   2566338..2567711 (+) Length   457 a.a.
NCBI ID   WP_014237467.1    Uniprot ID   G8QLY3
Organism   Azospira oryzae PS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2561338..2572711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSUI_RS11745 (Dsui_2411) alr 2562349..2563440 (+) 1092 WP_014237465.1 alanine racemase -
  DSUI_RS17740 (Dsui_2412) - 2563680..2566304 (+) 2625 WP_157870623.1 PAS domain S-box protein -
  DSUI_RS11760 (Dsui_2413) radA 2566338..2567711 (+) 1374 WP_014237467.1 DNA repair protein RadA Machinery gene
  DSUI_RS11765 (Dsui_2414) - 2567814..2568419 (-) 606 WP_014237468.1 DUF5610 domain-containing protein -
  DSUI_RS11770 (Dsui_2415) - 2568588..2571089 (+) 2502 WP_014237469.1 ABC transporter permease -
  DSUI_RS18260 (Dsui_2416) - 2571326..2572204 (+) 879 WP_014237470.1 toll/interleukin-1 receptor domain-containing protein -
  DSUI_RS11775 (Dsui_2417) - 2572415..2572606 (-) 192 WP_014237471.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48674.11 Da        Isoelectric Point: 7.6674

>NTDB_id=43138 DSUI_RS11760 WP_014237467.1 2566338..2567711(+) (radA) [Azospira oryzae PS]
MAKTKSIYTCTECGAQSPKWQGQCSACNAWNTLVETVAEAGGKGSGHRFESLAPGTPRLQALSEIETREAARLPTGLSEF
DRALGGGLVAGGVVLIGGDPGIGKSTLLLQALAALAPQHKVLYVSGEESGQQVALRARRLQLDVERLPLLAEINLERILG
VVQTEKPQVAVIDSIQTLWSDQLTSAPGSVAQVRECAAQLTRLAKQTGVTVILVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLIRAVKNRYGAVNELGVFGMTDKGLKGVSNPSALFLSQHGQEVAGSCVLVTQEGTRPLLVEIQALVDTTMGG
SPRRLSVGLEQNRLAMLLAVLHRHAGIGCFDQDVFVNAVGGVKISEPAADLPVLLAIISSLKNRPLPEKLVVFGEVGLAG
EIRPAPRGQERLKEAAKLGFTRALVPEANKPRQPLPGLEVVAVSRIEQAVERLRDWE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=43138 DSUI_RS11760 WP_014237467.1 2566338..2567711(+) (radA) [Azospira oryzae PS]
ATGGCGAAGACGAAAAGCATCTATACCTGCACCGAATGCGGTGCCCAGTCCCCCAAATGGCAGGGCCAGTGTTCCGCCTG
CAATGCCTGGAACACCCTGGTGGAAACCGTGGCCGAGGCCGGCGGCAAGGGCAGCGGCCACCGTTTCGAATCCCTGGCCC
CCGGCACGCCCAGGCTGCAGGCCCTCTCCGAGATCGAGACCCGGGAAGCGGCGCGCCTGCCCACGGGGCTGTCCGAATTC
GACCGGGCCCTGGGCGGCGGCCTGGTGGCCGGCGGCGTGGTGCTCATCGGCGGCGACCCGGGCATCGGCAAGAGCACCCT
GCTGCTGCAGGCCCTGGCCGCCCTGGCGCCCCAGCACAAGGTGCTCTACGTCAGCGGCGAAGAGTCGGGGCAGCAGGTGG
CCCTGCGGGCCCGGCGCCTGCAGCTGGACGTGGAGCGCCTGCCCCTGCTGGCGGAAATCAACCTGGAACGCATCCTCGGC
GTGGTGCAGACGGAAAAGCCCCAGGTGGCGGTGATCGACTCCATCCAGACCCTGTGGTCCGACCAGCTCACCTCGGCCCC
CGGCTCCGTGGCCCAGGTGCGCGAATGCGCCGCCCAGCTGACCCGGCTGGCCAAGCAGACCGGCGTCACCGTGATCCTGG
TGGGCCACGTGACCAAGGAAGGGGCCCTGGCCGGGCCCCGGGTGCTGGAACACATCGTGGACACGGTGCTGTATTTCGAA
GGCGACACCCATTCCTCCTTCCGCCTCATCCGGGCGGTGAAGAACCGCTACGGCGCGGTCAATGAACTGGGCGTCTTCGG
CATGACCGACAAGGGGCTCAAGGGCGTCTCCAACCCTTCGGCCCTGTTTCTTTCCCAGCACGGCCAGGAGGTGGCCGGCT
CCTGCGTCCTGGTGACCCAGGAAGGCACCCGGCCCCTGCTGGTGGAAATCCAGGCCCTGGTGGATACCACCATGGGCGGC
AGCCCGCGGCGCCTTTCCGTCGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGCCGGCAT
CGGCTGTTTCGACCAGGACGTCTTCGTCAATGCGGTGGGCGGGGTCAAGATCAGCGAACCGGCAGCGGATCTGCCGGTGC
TGCTGGCCATCATTTCCTCCCTGAAGAACCGGCCCCTGCCGGAAAAGCTGGTGGTCTTCGGCGAAGTGGGCCTGGCCGGC
GAGATCCGCCCGGCGCCCCGGGGCCAGGAACGACTCAAGGAAGCGGCCAAGCTGGGCTTCACCCGGGCCCTGGTACCCGA
GGCCAACAAGCCGCGCCAGCCCCTTCCCGGGCTGGAAGTGGTGGCGGTGAGCCGCATCGAACAGGCGGTGGAGCGGCTGC
GGGACTGGGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-221)

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G8QLY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

99.781

0.484
  radA Streptococcus mitis SK321

47.149

99.781

0.47
  radA Streptococcus pneumoniae D39

47.033

99.562

0.468
  radA Streptococcus pneumoniae TIGR4

47.033

99.562

0.468
  radA Streptococcus pneumoniae R6

47.033

99.562

0.468
  radA Streptococcus pneumoniae Rx1

47.033

99.562

0.468
  radA Streptococcus mitis NCTC 12261

46.813

99.562

0.466

Multiple sequence alignment