Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IHV08_RS00330 Genome accession   NZ_CP062497
Coordinates   60096..60326 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain CV16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55096..65326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS00300 (IHV08_00300) ridA 55260..55637 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  IHV08_RS00305 (IHV08_00305) spoVG 55832..56125 (+) 294 WP_003218346.1 septation regulator SpoVG -
  IHV08_RS00310 (IHV08_00310) glmU 56318..57688 (+) 1371 WP_192858149.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IHV08_RS00315 (IHV08_00315) prsS 57711..58664 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  IHV08_RS00320 (IHV08_00320) rplYB 58749..59363 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  IHV08_RS00325 (IHV08_00325) pth 59470..60036 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  IHV08_RS00330 (IHV08_00330) subA/fin 60096..60326 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  IHV08_RS00335 (IHV08_00335) mfd 60396..63929 (+) 3534 WP_181216731.1 transcription-repair coupling factor -
  IHV08_RS00340 (IHV08_00340) spoVT 64065..64601 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=431365 IHV08_RS00330 WP_003243417.1 60096..60326(+) (subA/fin) [Bacillus subtilis strain CV16]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=431365 IHV08_RS00330 WP_003243417.1 60096..60326(+) (subA/fin) [Bacillus subtilis strain CV16]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1