Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HAV28_RS02100 Genome accession   NZ_CP050291
Coordinates   468714..469115 (+) Length   133 a.a.
NCBI ID   WP_016395337.1    Uniprot ID   A0AAD0QXY3
Organism   Pseudomonas plecoglossicida strain PQLYC4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 463714..474115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAV28_RS02075 (HAV28_02075) pyrR 464617..465135 (-) 519 WP_016395342.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HAV28_RS02080 (HAV28_02080) ruvX 465181..465606 (-) 426 WP_016395341.1 Holliday junction resolvase RuvX -
  HAV28_RS02085 (HAV28_02085) - 465606..466175 (-) 570 WP_016395340.1 YqgE/AlgH family protein -
  HAV28_RS02090 (HAV28_02090) - 466525..467427 (-) 903 WP_016395339.1 energy transducer TonB -
  HAV28_RS02095 (HAV28_02095) gshB 467519..468472 (-) 954 WP_016395338.1 glutathione synthase -
  HAV28_RS02100 (HAV28_02100) pilG 468714..469115 (+) 402 WP_016395337.1 PleD family two-component system response regulator Regulator
  HAV28_RS02105 (HAV28_02105) pilH 469162..469527 (+) 366 WP_016395336.1 twitching motility response regulator PilH -
  HAV28_RS02110 (HAV28_02110) - 469524..470078 (+) 555 WP_008094837.1 chemotaxis protein CheW -
  HAV28_RS02115 (HAV28_02115) - 470126..472150 (+) 2025 WP_244212840.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14682.94 Da        Isoelectric Point: 6.3252

>NTDB_id=431304 HAV28_RS02100 WP_016395337.1 468714..469115(+) (pilG) [Pseudomonas plecoglossicida strain PQLYC4]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPQIIFVDVLMPRLDGYQTCAVIKHNSAFKDIP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKDELLDAIRAHVPGFAAHEQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=431304 HAV28_RS02100 WP_016395337.1 468714..469115(+) (pilG) [Pseudomonas plecoglossicida strain PQLYC4]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGACTCGCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGCGAAGC
GGGCTGCGAGGTGATCACCGCCAGTGACGGTTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCGCAGATCATTTTCG
TCGATGTGCTGATGCCGCGCCTGGACGGTTACCAGACCTGCGCCGTGATCAAGCACAACAGCGCCTTCAAGGACATTCCC
GTGATTCTCCTGTCATCACGCGACGGCCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGCTCCGACCAGTTCCTGACCAA
GCCCTTCAGCAAGGACGAACTGCTCGACGCGATCAGGGCCCATGTGCCCGGTTTCGCCGCGCATGAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.667

90.226

0.647