Detailed information NTG0043130

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DSUI_RS04945
• Genome accession: NC_016616
• Coordinates: 1056323..1057327 (-)
• Length: 334 a.a.
• NCBI ID: WP_014236128.1
• Uniprot ID: G8QJK2
• Organism: Azospira oryzae PS
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1051323..1062327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSUI_RS19750 (Dsui_1018)	-	1051398..1051616 (+)	219	WP_014236123.1	SMI1/KNR4 family protein	-
DSUI_RS04920 (Dsui_1019)	-	1051587..1052492 (-)	906	WP_238526334.1	IS110 family transposase	-
DSUI_RS04925 (Dsui_1020)	-	1052734..1053084 (+)	351	WP_157870582.1	hypothetical protein	-
DSUI_RS04930 (Dsui_1021)	-	1053184..1054518 (-)	1335	WP_014236125.1	FAD-dependent oxidoreductase	-
DSUI_RS04935 (Dsui_1022)	ftsX	1054727..1055632 (-)	906	WP_014236126.1	permease-like cell division protein FtsX	-
DSUI_RS04940 (Dsui_1023)	-	1055629..1056309 (-)	681	WP_014236127.1	cell division ATP-binding protein FtsE	-
DSUI_RS04945 (Dsui_1024)	pilA	1056323..1057327 (-)	1005	WP_014236128.1	signal recognition particle-docking protein FtsY	Machinery gene
DSUI_RS04950 (Dsui_1025)	-	1057498..1058865 (+)	1368	WP_014236129.1	M16 family metallopeptidase	-
DSUI_RS04955 (Dsui_1026)	-	1058877..1060172 (+)	1296	WP_157870583.1	M16 family metallopeptidase	-
DSUI_RS04960 (Dsui_1027)	rsmD	1060172..1060780 (+)	609	WP_014236131.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DSUI_RS04965 (Dsui_1028)	coaD	1060770..1061267 (+)	498	WP_014236132.1	pantetheine-phosphate adenylyltransferase	-
DSUI_RS04970 (Dsui_1029)	-	1061284..1061541 (+)	258	WP_014236133.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 35682.22 Da
• Isoelectric Point: 6.8846

>NTDB_id=43130 DSUI_RS04945 WP_014236128.1 1056323..1057327(-) (pilA) [Azospira oryzae PS]
MFGFLKKSDKDQDATPATAAAVAPVPEPLDKPLSWRERLFAGLSRTRSQLGGKLKSVFARGKVDDELLEELETLLLTSDV
GMDATMHLLDELKRRAKQDKLEGAAAIQQALADTLAQMLAPLEAPLQVDSHKPFVIMIAGVNGAGKTTSIGKLAKYFQSQ
GKSVLLAAGDTFRAAAREQLMTWGERNNVTVIAQESGDPAAVVFDAIAAAKARGIDVVLADTAGRLPTQLHLMEEIAKVR
RVIQKADPTGPHEVMLVLDANIGQNALAQVKAFDKSINVTGLVLTKLDGTAKGGVIAAIARQCPKPVRFIGVGEGIDDLR
PFVARDFVDALFGE

Nucleotide

• Length: 1005 bp

>NTDB_id=43130 DSUI_RS04945 WP_014236128.1 1056323..1057327(-) (pilA) [Azospira oryzae PS]
ATGTTTGGTTTCTTGAAAAAATCCGACAAAGACCAGGACGCCACGCCCGCCACCGCAGCCGCCGTGGCGCCGGTGCCGGA
GCCCCTGGACAAGCCGCTCTCCTGGCGCGAGCGCCTTTTCGCCGGCCTCTCCCGCACCCGCTCCCAGCTTGGCGGCAAGC
TCAAGTCCGTCTTTGCCCGAGGCAAGGTGGACGACGAACTGCTGGAAGAACTGGAGACCCTGTTGCTGACCAGCGACGTG
GGCATGGACGCCACCATGCACCTGCTCGACGAACTGAAGCGCCGCGCCAAGCAGGACAAGCTGGAAGGCGCCGCCGCCAT
CCAGCAGGCCCTGGCCGACACCCTGGCCCAGATGCTGGCCCCCCTGGAAGCGCCCCTGCAGGTGGATAGCCACAAGCCCT
TCGTGATCATGATTGCCGGGGTCAACGGCGCCGGCAAGACCACCTCCATCGGCAAGCTGGCCAAGTACTTCCAGAGCCAG
GGCAAGAGCGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCTGCCCGGGAACAGCTGATGACCTGGGGCGAGCGCAA
CAACGTCACGGTCATCGCCCAGGAATCCGGCGACCCGGCGGCCGTGGTCTTCGATGCCATCGCCGCCGCCAAGGCCCGGG
GCATCGACGTGGTGCTGGCCGACACCGCCGGCCGCCTGCCCACCCAGCTGCACCTCATGGAAGAGATCGCCAAGGTGCGC
CGGGTGATCCAGAAGGCCGACCCCACCGGCCCCCACGAGGTGATGCTGGTGCTGGATGCCAACATCGGCCAGAACGCCCT
GGCCCAGGTGAAGGCCTTCGACAAGTCCATCAACGTCACCGGCCTGGTGCTGACCAAACTGGACGGCACCGCCAAGGGCG
GCGTCATCGCCGCCATCGCCCGCCAGTGTCCCAAGCCGGTGCGCTTCATCGGCGTCGGCGAAGGCATCGACGACCTGCGC
CCCTTCGTCGCCCGGGACTTCGTGGACGCCCTCTTCGGCGAGTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (50-115)

• SRP54-type protein, GTPase domain (SRP54) (133-332)

3D structure

• AlphaFold DB: G8QJK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	63.158	91.018	0.575