Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HB751_RS06410 Genome accession   NZ_CP050272
Coordinates   1309410..1310810 (-) Length   466 a.a.
NCBI ID   WP_019804647.1    Uniprot ID   -
Organism   Streptococcus mutans strain P6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1304410..1315810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB751_RS06385 (HB751_06385) - 1304817..1305365 (-) 549 WP_002262515.1 hypothetical protein -
  HB751_RS06390 (HB751_06390) - 1305432..1305956 (-) 525 WP_002268868.1 transcription repressor NadR -
  HB751_RS06395 (HB751_06395) gltX 1306072..1307529 (-) 1458 WP_019804648.1 glutamate--tRNA ligase -
  HB751_RS06400 (HB751_06400) - 1307924..1308637 (-) 714 WP_002262518.1 TIGR00266 family protein -
  HB751_RS06405 (HB751_06405) - 1308826..1309320 (-) 495 WP_002262519.1 beta-class carbonic anhydrase -
  HB751_RS06410 (HB751_06410) radA 1309410..1310810 (-) 1401 WP_019804647.1 DNA repair protein RadA Machinery gene
  HB751_RS06415 (HB751_06415) - 1310768..1311238 (-) 471 WP_002270349.1 cysteine hydrolase family protein -
  HB751_RS06420 (HB751_06420) - 1311248..1311691 (-) 444 WP_019804646.1 dUTP diphosphatase -
  HB751_RS06425 (HB751_06425) - 1312015..1313034 (+) 1020 WP_002269244.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  HB751_RS06430 (HB751_06430) galU 1313036..1313956 (+) 921 WP_002308059.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB751_RS06435 (HB751_06435) - 1313978..1314649 (-) 672 WP_002265013.1 rhomboid family intramembrane serine protease -
  HB751_RS06440 (HB751_06440) - 1314636..1315172 (-) 537 WP_019313837.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51193.71 Da        Isoelectric Point: 6.7124

>NTDB_id=431187 HB751_RS06410 WP_019804647.1 1309410..1310810(-) (radA) [Streptococcus mutans strain P6]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSDGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=431187 HB751_RS06410 WP_019804647.1 1309410..1310810(-) (radA) [Streptococcus mutans strain P6]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGATGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

AAA domain (AAA_25)

(77-231)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.938

96.996

0.863
  radA Streptococcus pneumoniae D39

88.938

96.996

0.863
  radA Streptococcus pneumoniae R6

88.938

96.996

0.863
  radA Streptococcus pneumoniae TIGR4

88.938

96.996

0.863
  radA Streptococcus mitis SK321

88.938

96.996

0.863
  radA Streptococcus mitis NCTC 12261

88.717

96.996

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603