Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   HB752_RS09960 Genome accession   NZ_CP050271
Coordinates   2030493..2031206 (-) Length   237 a.a.
NCBI ID   WP_002269411.1    Uniprot ID   -
Organism   Streptococcus mutans strain S1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2025493..2036206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS09950 (HB752_09950) dtd 2026664..2027110 (+) 447 WP_002262355.1 D-aminoacyl-tRNA deacylase -
  HB752_RS09955 (HB752_09955) dexA 2027595..2030147 (+) 2553 WP_080010205.1 dextranase DexA -
  HB752_RS09960 (HB752_09960) treR 2030493..2031206 (-) 714 WP_002269411.1 trehalose operon repressor Regulator
  HB752_RS09965 (HB752_09965) treP 2031380..2033347 (+) 1968 WP_002269412.1 PTS system trehalose-specific EIIBC component -
  HB752_RS09970 (HB752_09970) treC 2033373..2035001 (+) 1629 WP_167311865.1 alpha,alpha-phosphotrehalase -
  HB752_RS09975 (HB752_09975) - 2035087..2035425 (+) 339 Protein_1924 lipase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27823.13 Da        Isoelectric Point: 9.7513

>NTDB_id=431154 HB752_RS09960 WP_002269411.1 2030493..2031206(-) (treR) [Streptococcus mutans strain S1]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQTYASSRDTVRKALQLLTRAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=431154 HB752_RS09960 WP_002269411.1 2030493..2031206(-) (treR) [Streptococcus mutans strain S1]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGACCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAGGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992