Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   HB753_RS05100 Genome accession   NZ_CP050270
Coordinates   1014504..1014938 (-) Length   144 a.a.
NCBI ID   WP_019804751.1    Uniprot ID   -
Organism   Streptococcus mutans strain S4     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1010954..1018296 1014504..1014938 within 0


Gene organization within MGE regions


Location: 1010954..1018296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS05090 (HB753_05090) rcrQ 1010954..1012708 (-) 1755 WP_019804753.1 ABC transporter ATP-binding protein Regulator
  HB753_RS05095 (HB753_05095) rcrP 1012698..1014500 (-) 1803 WP_019804752.1 ABC transporter ATP-binding protein Regulator
  HB753_RS05100 (HB753_05100) rcrR 1014504..1014938 (-) 435 WP_019804751.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HB753_RS05105 (HB753_05105) queC 1015491..1016144 (+) 654 WP_019804749.1 7-cyano-7-deazaguanine synthase QueC -
  HB753_RS05110 (HB753_05110) queD 1016144..1016590 (+) 447 WP_002281982.1 6-carboxytetrahydropterin synthase QueD -
  HB753_RS05115 (HB753_05115) queE 1016587..1017303 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  HB753_RS05120 (HB753_05120) queF 1017316..1017804 (+) 489 WP_002263288.1 preQ(1) synthase -
  HB753_RS05125 (HB753_05125) - 1017913..1018296 (+) 384 WP_002298133.1 DUF3021 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16719.64 Da        Isoelectric Point: 10.6361

>NTDB_id=431056 HB753_RS05100 WP_019804751.1 1014504..1014938(-) (rcrR) [Streptococcus mutans strain S4]
MKEPFSEFKNLITATERYIQKLSKSHGVEHLSGPQGWTVMFLKDNQGKEIFIKDIEKRLDISKSVTSNLIKRMEKNGFIS
VIPSRKDRRYKQIVLTPLGQEKAGKITVFLTDLKKLLLKDISQEDLSVARKVFKQIKQNLEKKE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=431056 HB753_RS05100 WP_019804751.1 1014504..1014938(-) (rcrR) [Streptococcus mutans strain S4]
ATGAAGGAGCCTTTTAGTGAATTTAAAAACCTCATTACAGCAACAGAAAGATATATTCAAAAATTATCCAAAAGCCATGG
TGTTGAACATCTGTCCGGACCTCAGGGATGGACAGTTATGTTTTTAAAGGATAATCAAGGAAAGGAAATTTTTATTAAAG
ATATTGAAAAAAGGTTAGATATCTCAAAATCTGTGACCAGTAATCTCATTAAACGAATGGAAAAAAATGGTTTTATTTCT
GTTATTCCTTCCAGAAAAGACAGACGATACAAGCAAATTGTTTTAACGCCATTAGGTCAGGAAAAAGCTGGAAAAATAAC
TGTTTTTTTAACAGATCTTAAAAAGTTGCTTCTAAAAGATATTAGTCAGGAAGACTTATCAGTTGCTCGAAAGGTTTTTA
AACAAATCAAACAAAATTTAGAAAAGAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

99.306

100

0.993