Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   HB753_RS03055 Genome accession   NZ_CP050270
Coordinates   604641..605534 (-) Length   297 a.a.
NCBI ID   WP_019804828.1    Uniprot ID   -
Organism   Streptococcus mutans strain S4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 599641..610534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS03030 (HB753_03030) cas1 601761..602627 (+) 867 WP_002269449.1 type II CRISPR-associated endonuclease Cas1 -
  HB753_RS03035 (HB753_03035) cas2 602624..602968 (+) 345 WP_002272765.1 CRISPR-associated endonuclease Cas2 -
  HB753_RS03040 (HB753_03040) csn2 602958..603620 (+) 663 WP_002263546.1 type II-A CRISPR-associated protein Csn2 -
  HB753_RS03045 (HB753_03045) - 603717..603908 (+) 192 WP_002264916.1 type II toxin-antitoxin system HicA family toxin -
  HB753_RS03050 (HB753_03050) - 603926..604303 (+) 378 WP_002265422.1 type II toxin-antitoxin system HicB family antitoxin -
  HB753_RS03055 (HB753_03055) irvR 604641..605534 (-) 894 WP_019804828.1 LexA family transcriptional regulator IrvR Regulator
  HB753_RS03060 (HB753_03060) - 605850..606134 (+) 285 WP_002278032.1 helix-turn-helix transcriptional regulator -
  HB753_RS03065 (HB753_03065) gbpC 606297..608048 (+) 1752 WP_167311816.1 glucan-binding protein GbpC -
  HB753_RS10360 (HB753_03070) - 608178..608408 (+) 231 WP_002282891.1 hypothetical protein -
  HB753_RS10445 - 608443..608571 (+) 129 WP_002283610.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33624.34 Da        Isoelectric Point: 6.9215

>NTDB_id=431046 HB753_RS03055 WP_019804828.1 604641..605534(-) (irvR) [Streptococcus mutans strain S4]
MGRGKLTPQDLEAMKAISANLQRLLAESGMKQSHLATILNIPTSSLNEYVKGKSLPKIGNIQKIADYFGLQKSDIDPRFA
SKKDSSTLDKINHIAKQLEMKRQIKVLDFCYQQSKEQDETASLSASDETTDDKVADKSNHTQYQKVVDSFIAKELNDQTI
IHWDNVIKAKDLYQTFGRQYENIQIYGEVSAGTGIWVGHEKQETIKYPIPIPEHDIALTVNGNSMEPLFYNGDVIFVKKT
KAIHHGQIIVVIVNNEAYVKKLYRKNKEIRLISLNPDYDDIILKENDTIEVIGTVIT

Nucleotide


Download         Length: 894 bp        

>NTDB_id=431046 HB753_RS03055 WP_019804828.1 604641..605534(-) (irvR) [Streptococcus mutans strain S4]
ATGGGACGCGGTAAATTAACTCCACAAGATTTAGAAGCAATGAAGGCTATTTCTGCCAATCTTCAAAGACTTCTAGCTGA
GAGCGGAATGAAACAATCTCACTTAGCCACTATCCTTAACATTCCTACAAGTAGTCTTAATGAATATGTTAAAGGAAAGA
GTTTGCCAAAAATAGGGAATATTCAAAAAATCGCAGATTACTTTGGTCTCCAAAAATCCGATATTGACCCTAGATTTGCA
AGTAAAAAGGACTCTTCTACTCTTGATAAAATTAATCATATTGCCAAACAATTAGAAATGAAGAGACAGATAAAAGTCTT
AGATTTCTGTTACCAACAATCAAAGGAACAAGATGAAACAGCAAGCTTATCTGCCAGTGATGAAACGACTGATGATAAAG
TTGCTGACAAATCAAATCATACGCAGTATCAAAAGGTTGTTGATTCTTTTATTGCCAAAGAATTAAACGATCAGACAATT
ATTCATTGGGATAATGTGATAAAAGCTAAGGATTTGTATCAAACCTTTGGACGTCAATACGAAAACATTCAGATTTATGG
TGAAGTTTCAGCTGGTACTGGTATCTGGGTTGGACATGAAAAACAAGAAACCATTAAATACCCAATACCAATTCCAGAAC
ATGATATTGCTCTTACTGTCAATGGTAATAGTATGGAACCTTTATTTTACAACGGTGACGTTATTTTTGTTAAAAAGACT
AAAGCTATCCATCACGGACAAATTATCGTTGTTATTGTAAATAATGAGGCATATGTCAAAAAACTCTACCGAAAAAACAA
AGAAATTCGACTCATCTCATTAAATCCAGATTATGATGACATCATTTTAAAAGAAAATGATACAATTGAAGTCATCGGAA
CGGTCATTACCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(22-70)

Peptidase S24-like (Peptidase_S24)

(184-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

98.99

100

0.99