Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   ILP78_RS04495 Genome accession   NZ_CP062465
Coordinates   932082..932795 (-) Length   237 a.a.
NCBI ID   WP_031768797.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 927082..937795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP78_RS04460 (ILP78_04460) sph 928126..928950 (-) 825 Protein_875 sphingomyelin phosphodiesterase -
  ILP78_RS04465 (ILP78_04465) - 929007..930044 (-) 1038 WP_000857198.1 tyrosine-type recombinase/integrase -
  ILP78_RS04470 (ILP78_04470) - 930217..930756 (-) 540 WP_000391618.1 type II toxin-antitoxin system PemK/MazF family toxin -
  ILP78_RS04475 (ILP78_04475) - 930896..931063 (-) 168 WP_000705238.1 hypothetical protein -
  ILP78_RS04480 (ILP78_04480) - 931263..931448 (-) 186 WP_001089804.1 hypothetical protein -
  ILP78_RS04485 (ILP78_04485) - 931435..931590 (-) 156 WP_172440451.1 hypothetical protein -
  ILP78_RS04490 (ILP78_04490) - 931621..932064 (-) 444 WP_000037409.1 hypothetical protein -
  ILP78_RS04495 (ILP78_04495) irvR 932082..932795 (-) 714 WP_031768797.1 XRE family transcriptional regulator Regulator
  ILP78_RS04500 (ILP78_04500) - 932758..932933 (+) 176 Protein_883 transcriptional regulator -
  ILP78_RS04505 (ILP78_04505) - 932930..933199 (+) 270 WP_047432554.1 helix-turn-helix transcriptional regulator -
  ILP78_RS04510 (ILP78_04510) - 933214..933522 (+) 309 WP_194085886.1 hypothetical protein -
  ILP78_RS04515 (ILP78_04515) - 933679..934467 (+) 789 WP_069986438.1 phage antirepressor -
  ILP78_RS04520 (ILP78_04520) - 934484..934678 (+) 195 WP_001566738.1 hypothetical protein -
  ILP78_RS04525 (ILP78_04525) - 934673..935029 (-) 357 WP_000768245.1 DUF2513 domain-containing protein -
  ILP78_RS04530 (ILP78_04530) - 935079..935270 (+) 192 WP_000389906.1 hypothetical protein -
  ILP78_RS04535 (ILP78_04535) - 935272..935499 (-) 228 WP_000801108.1 hypothetical protein -
  ILP78_RS04540 (ILP78_04540) - 935558..935878 (+) 321 WP_001120935.1 DUF771 domain-containing protein -
  ILP78_RS04545 (ILP78_04545) - 935875..936036 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  ILP78_RS04550 (ILP78_04550) - 936129..936389 (+) 261 WP_000291489.1 DUF1108 family protein -
  ILP78_RS04555 (ILP78_04555) - 936398..936661 (+) 264 WP_001205732.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27030.67 Da        Isoelectric Point: 5.4243

>NTDB_id=431019 ILP78_RS04495 WP_031768797.1 932082..932795(-) (irvR) [Staphylococcus aureus strain MRSA - AMRF 6]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQKNVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=431019 ILP78_RS04495 WP_031768797.1 932082..932795(-) (irvR) [Staphylococcus aureus strain MRSA - AMRF 6]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGAGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAAAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGACGGTGAAATTATATTCGTAGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGAATACGATGATCTACACTTTTACAGGAACGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(13-63)

Peptidase S24-like (Peptidase_S24)

(127-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.571

100

0.397