Detailed information NTG0043100

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VEJY3_RS13225
• Genome accession: NC_016613
• Coordinates: 2943567..2944553 (-)
• Length: 328 a.a.
• NCBI ID: WP_014232977.1
• Uniprot ID: -
• Organism: Vibrio sp. EJY3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2938567..2949553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VEJY3_RS13210 (VEJY3_13160)	recA	2939118..2940164 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
VEJY3_RS13215 (VEJY3_13165)	pncC	2940355..2940846 (-)	492	WP_014232975.1	nicotinamide-nucleotide amidase	-
VEJY3_RS13220 (VEJY3_13170)	mutS	2940931..2943492 (+)	2562	WP_014232976.1	DNA mismatch repair protein MutS	-
VEJY3_RS13225 (VEJY3_13175)	rpoS	2943567..2944553 (-)	987	WP_014232977.1	RNA polymerase sigma factor RpoS	Regulator
VEJY3_RS13230 (VEJY3_13180)	nlpD	2944634..2945557 (-)	924	WP_041170268.1	murein hydrolase activator NlpD	-
VEJY3_RS13235 (VEJY3_13185)	-	2945571..2946197 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VEJY3_RS13240 (VEJY3_13190)	surE	2946197..2946943 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
VEJY3_RS13245 (VEJY3_13195)	truD	2946973..2948016 (-)	1044	WP_014232981.1	tRNA pseudouridine(13) synthase TruD	-
VEJY3_RS13250 (VEJY3_13200)	ispF	2948059..2948538 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VEJY3_RS13255 (VEJY3_13205)	ispD	2948552..2949259 (-)	708	WP_014232983.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VEJY3_RS13260 (VEJY3_13210)	ftsB	2949261..2949542 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37329.22 Da
• Isoelectric Point: 4.7268

>NTDB_id=43100 VEJY3_RS13225 WP_014232977.1 2943567..2944553(-) (rpoS) [Vibrio sp. EJY3]
MSISNTVTKVEEFDFDDESVKTVASQLGKTSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=43100 VEJY3_RS13225 WP_014232977.1 2943567..2944553(-) (rpoS) [Vibrio sp. EJY3]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAAACATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGCTTGGCCCTTCTTGACCTTATTGAAGAAGGTAACCTTGGCTTGATCCGTGCAGTTGAGAAATTCGACCCGGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACTATT
CGCCTACCGATTCACGTTGTGAAAGAGCTGAACATTTACTTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAACGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATCATTCCAGATGGTAACAATTCTGAC
CCTGAAGTTTCGACACAAGATGACGATATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGCTAAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTTACTC
GTGAACGCGTTCGCCAGATCCAAGTGGAAGGTTTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAG
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.431	100	0.86