Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VEJY3_RS13105 Genome accession   NC_016613
Coordinates   2921712..2922230 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio sp. EJY3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2916712..2927230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS13080 (VEJY3_13070) rimM 2916794..2917342 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  VEJY3_RS13085 (VEJY3_13075) rpsP 2917373..2917621 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  VEJY3_RS13090 (VEJY3_13080) ffh 2917830..2919212 (-) 1383 WP_014232959.1 signal recognition particle protein -
  VEJY3_RS13095 (VEJY3_13085) - 2919437..2920231 (+) 795 WP_014232960.1 inner membrane protein YpjD -
  VEJY3_RS13100 (VEJY3_13090) - 2920350..2921627 (+) 1278 WP_014232961.1 HlyC/CorC family transporter -
  VEJY3_RS13105 (VEJY3_13095) luxS 2921712..2922230 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  VEJY3_RS13110 (VEJY3_13100) - 2922299..2922904 (-) 606 WP_014232963.1 hypothetical protein -
  VEJY3_RS13115 (VEJY3_13105) gshA 2922929..2924497 (-) 1569 WP_014232964.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=43097 VEJY3_RS13105 WP_014232962.1 2921712..2922230(-) (luxS) [Vibrio sp. EJY3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=43097 VEJY3_RS13105 WP_014232962.1 2921712..2922230(-) (luxS) [Vibrio sp. EJY3]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCGAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCCGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCGCCA
ATGGGATGTCGTACTGGCTTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTCGAAAGTCAGAACAAAATCCCTGAGCTGAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGATGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAATTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment