Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HBB04_RS16030 Genome accession   NZ_CP050260
Coordinates   3515831..3516241 (+) Length   136 a.a.
NCBI ID   WP_005888348.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens strain X-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3510831..3521241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBB04_RS16000 (HBB04_03231) - 3510851..3511855 (-) 1005 WP_005888337.1 aspartate carbamoyltransferase catalytic subunit -
  HBB04_RS16005 (HBB04_03232) pyrR 3511868..3512380 (-) 513 WP_024689954.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HBB04_RS16010 (HBB04_03233) ruvX 3512479..3512919 (-) 441 WP_005888341.1 Holliday junction resolvase RuvX -
  HBB04_RS16015 (HBB04_03234) - 3512919..3513491 (-) 573 WP_005888343.1 YqgE/AlgH family protein -
  HBB04_RS16020 (HBB04_03235) - 3513568..3514470 (-) 903 WP_024668620.1 energy transducer TonB -
  HBB04_RS16025 (HBB04_03236) gshB 3514626..3515585 (-) 960 WP_024668621.1 glutathione synthase -
  HBB04_RS16030 (HBB04_03237) pilG 3515831..3516241 (+) 411 WP_005888348.1 twitching motility response regulator PilG Regulator
  HBB04_RS16035 (HBB04_03238) pilH 3516288..3516653 (+) 366 WP_122356692.1 twitching motility response regulator PilH -
  HBB04_RS16040 (HBB04_03239) - 3516668..3517207 (+) 540 WP_005888350.1 chemotaxis protein CheW -
  HBB04_RS16045 (HBB04_03240) - 3517397..3519439 (+) 2043 WP_005888352.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14979.45 Da        Isoelectric Point: 8.5340

>NTDB_id=430925 HBB04_RS16030 WP_005888348.1 3515831..3516241(+) (pilG) [Pseudomonas coronafaciens strain X-1]
MEQHASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPRIIFVDIMMPRLDGYQTCALIKNNRAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLNAIKAHVPGFVAAEHHLS

Nucleotide


Download         Length: 411 bp        

>NTDB_id=430925 HBB04_RS16030 WP_005888348.1 3515831..3516241(+) (pilG) [Pseudomonas coronafaciens strain X-1]
ATGGAACAACACGCCTCCGCCTTGAAAGTCATGGTCATCGATGACTCGAAGACTATCCGCCGCACCGCCGAAACGCTGCT
TAAAAACGCTGGCTGTGAAGTCATCACGGCGATAGACGGTTTCGACGCACTGGCCAAAATTGCCGATAACCACCCGCGCA
TCATATTCGTCGATATCATGATGCCGCGCCTGGACGGCTATCAGACCTGTGCACTGATCAAGAACAACCGCGCATTCAAA
TCGACGCCGGTCATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGTTCCGACCAATT
TCTGACAAAGCCTTTCAGCAAGGAAGAACTGCTCAACGCAATCAAGGCCCATGTGCCCGGCTTCGTTGCCGCAGAACACC
ATCTATCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

91.912

0.699