Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VEJY3_RS10945 Genome accession   NC_016613
Coordinates   2425711..2427072 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2420711..2432072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS10910 (VEJY3_10870) moaE 2421269..2421724 (-) 456 WP_014232528.1 molybdopterin synthase catalytic subunit MoaE -
  VEJY3_RS10915 (VEJY3_10875) moaD 2421726..2421983 (-) 258 WP_014232529.1 molybdopterin synthase sulfur carrier subunit -
  VEJY3_RS10920 (VEJY3_10880) moaC 2421980..2422459 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  VEJY3_RS10925 (VEJY3_10885) moaB 2422487..2422999 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  VEJY3_RS10930 (VEJY3_10890) moaA 2423100..2424089 (-) 990 WP_014232532.1 GTP 3',8-cyclase MoaA -
  VEJY3_RS10935 (VEJY3_10895) - 2424396..2425292 (+) 897 WP_014232533.1 YvcK family protein -
  VEJY3_RS10940 (VEJY3_10900) luxU 2425370..2425714 (-) 345 WP_014232534.1 quorum-sensing phosphorelay protein LuxU -
  VEJY3_RS10945 (VEJY3_10905) luxO 2425711..2427072 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VEJY3_RS10950 (VEJY3_10910) uvrB 2427403..2429433 (-) 2031 WP_014232536.1 excinuclease ABC subunit UvrB -
  VEJY3_RS10960 (VEJY3_10915) rsxA 2430419..2430997 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  VEJY3_RS10965 (VEJY3_10920) rsxB 2431001..2431597 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=43091 VEJY3_RS10945 WP_049794667.1 2425711..2427072(-) (luxO) [Vibrio sp. EJY3]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=43091 VEJY3_RS10945 WP_049794667.1 2425711..2427072(-) (luxO) [Vibrio sp. EJY3]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACTTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGCCTGAAACATCGTATCCCCGATCTTATTCTGCTTGATCTTCGTCTGCCTGACATGA
CGGGTATGGACGTTCTGCATGCAGTGAAACAAAGTCACCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGATTACGTGTCAC
GGTGAACAACGCAATACGAAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGCACCATTGACTCAGCCGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGCGAAAGTGGTACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGAGGTGATAAACCATTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCAGAATTAGCGGATGGCGGCACGCTTTTTCTCGATGAATTGTGTGAAATGGATTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAAACGGGTACCTTCCAGAAAGTTGGCTCCTCAAAAATGAAAAGCGTGGATGT
GCGTTTTGTGTGCGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACTTATATTACCGCT
TATACGTAATACCATTGCATCTACCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCGATTGAACGCGCAATTGAAGCGTGCGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859

Multiple sequence alignment