Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   IF693_RS06000 Genome accession   NZ_CP062421
Coordinates   1202080..1203162 (-) Length   360 a.a.
NCBI ID   WP_240128235.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197080..1208162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF693_RS05980 (IF693_05985) - 1197689..1197793 (-) 105 WP_001790092.1 hypothetical protein -
  IF693_RS05985 (IF693_05990) secA 1197835..1200366 (-) 2532 WP_000506408.1 preprotein translocase subunit SecA -
  IF693_RS05990 (IF693_05995) raiA 1200780..1201352 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  IF693_RS05995 (IF693_06000) - 1201413..1202087 (-) 675 WP_001057965.1 ComF family protein -
  IF693_RS06000 (IF693_06005) comFA 1202080..1203162 (-) 1083 WP_240128235.1 DEAD/DEAH box helicase Machinery gene
  IF693_RS06005 (IF693_06010) fakB1 1203526..1204392 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  IF693_RS06010 (IF693_06015) - 1204536..1205177 (+) 642 WP_064129979.1 YigZ family protein -
  IF693_RS06015 (IF693_06020) - 1205348..1206403 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  IF693_RS06020 (IF693_06025) - 1206721..1207791 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42036.53 Da        Isoelectric Point: 9.7628

>NTDB_id=430886 IF693_RS06000 WP_240128235.1 1202080..1203162(-) (comFA) [Staphylococcus aureus strain NAS_AN_003]
MDNVTRYKITESSQSSSQAYYHLSFEMSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKNAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=430886 IF693_RS06000 WP_240128235.1 1202080..1203162(-) (comFA) [Staphylococcus aureus strain NAS_AN_003]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAAAT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAAACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364