Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VEJY3_RS06420 Genome accession   NC_016613
Coordinates   1417032..1418453 (-) Length   473 a.a.
NCBI ID   WP_014231627.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1412032..1423453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS06395 (VEJY3_06250) - 1412637..1413287 (+) 651 WP_014231622.1 thiopurine S-methyltransferase -
  VEJY3_RS06400 (VEJY3_06255) purT 1413381..1414556 (-) 1176 WP_014231623.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VEJY3_RS06405 (VEJY3_06260) cdd 1414704..1415591 (-) 888 WP_014231624.1 cytidine deaminase -
  VEJY3_RS06410 (VEJY3_06265) - 1415920..1416597 (-) 678 WP_014231625.1 LrgB family protein -
  VEJY3_RS06415 (VEJY3_06270) - 1416599..1416973 (-) 375 WP_020333045.1 CidA/LrgA family protein -
  VEJY3_RS06420 (VEJY3_06275) sbcB 1417032..1418453 (-) 1422 WP_014231627.1 exodeoxyribonuclease I Machinery gene
  VEJY3_RS06425 (VEJY3_06280) - 1418636..1419832 (+) 1197 WP_014231628.1 site-specific integrase -
  VEJY3_RS06430 (VEJY3_06285) - 1419899..1420993 (+) 1095 WP_041170215.1 hypothetical protein -
  VEJY3_RS06435 (VEJY3_06290) - 1421108..1421635 (+) 528 WP_014231630.1 hypothetical protein -
  VEJY3_RS06440 (VEJY3_06295) - 1421709..1422275 (-) 567 WP_014231631.1 BRCT domain-containing protein -
  VEJY3_RS06445 (VEJY3_06300) - 1422279..1422776 (-) 498 WP_014231632.1 hypothetical protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54433.58 Da        Isoelectric Point: 4.7761

>NTDB_id=43087 VEJY3_RS06420 WP_014231627.1 1417032..1418453(-) (sbcB) [Vibrio sp. EJY3]
MNNSEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNTVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=43087 VEJY3_RS06420 WP_014231627.1 1417032..1418453(-) (sbcB) [Vibrio sp. EJY3]
ATGAATAACTCAGAACAGCCGACATTCTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATAACCCCACAAAAGGCGGTGCAGGAAGGTCTGCCTGAGCCT
GAATTTATTGCTAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCATATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAGCATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACACGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCTATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTCTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGC
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGCACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment