Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   F0186_RS09465 Genome accession   NZ_CP050255
Coordinates   1955385..1957067 (-) Length   560 a.a.
NCBI ID   WP_002343032.1    Uniprot ID   -
Organism   Enterococcus faecium strain DT1-1 voucher LVRI-DT1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1950385..1962067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0186_RS09435 (F0186_09435) ftsL 1951658..1952059 (-) 402 WP_002291866.1 cell division protein FtsL -
  F0186_RS09440 (F0186_09440) rsmH 1952064..1953023 (-) 960 WP_002291868.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  F0186_RS09445 (F0186_09445) mraZ 1953044..1953475 (-) 432 WP_002291870.1 division/cell wall cluster transcriptional repressor MraZ -
  F0186_RS09450 (F0186_09450) - 1953645..1954013 (-) 369 WP_002291871.1 DUF3397 domain-containing protein -
  F0186_RS09455 (F0186_09455) - 1954184..1955140 (+) 957 WP_002291874.1 magnesium transporter CorA family protein -
  F0186_RS09460 (F0186_09460) - 1955213..1955329 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  F0186_RS09465 (F0186_09465) recN 1955385..1957067 (-) 1683 WP_002343032.1 DNA repair protein RecN Machinery gene
  F0186_RS09470 (F0186_09470) - 1957085..1957534 (-) 450 WP_002291879.1 arginine repressor -
  F0186_RS09475 (F0186_09475) - 1957641..1958459 (-) 819 WP_002291881.1 TlyA family RNA methyltransferase -
  F0186_RS09480 (F0186_09480) - 1958468..1959358 (-) 891 WP_002329021.1 polyprenyl synthetase family protein -
  F0186_RS09485 (F0186_09485) - 1959360..1959584 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  F0186_RS09490 (F0186_09490) xseA 1959589..1960926 (-) 1338 WP_002315413.1 exodeoxyribonuclease VII large subunit -
  F0186_RS09495 (F0186_09495) - 1960927..1961781 (-) 855 WP_002343033.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63348.70 Da        Isoelectric Point: 4.5791

>NTDB_id=430831 F0186_RS09465 WP_002343032.1 1955385..1957067(-) (recN) [Enterococcus faecium strain DT1-1 voucher LVRI-DT1-1]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCILEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRKIGSYLVDIQGQNEHQELLQPESHLALLDRFGDAAFQQKKK
SYQQEYTSYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIAAADLQVGEEEKLKEEREKLSNYQKVADGLAAGYGALTNN
EQNSVDGVGLAVAELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDENRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLQLARRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=430831 F0186_RS09465 WP_002343032.1 1955385..1957067(-) (recN) [Enterococcus faecium strain DT1-1 voucher LVRI-DT1-1]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCGGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATCATTATCGATGCTTTAGGTTTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGCGCAGAAAAATGCATTCTTGAAGGATTGTTTGAACTTCCGAAACAAGAAGGATTCTCTGAATTGATG
GTTGAATTAGGTATCGAAACGGATGAAGACAATCTGATCGTTCGACGAGATATGTCGTTGACTGGAAAAAATGTTTGCCG
AGTGAATGGTCACATCATCACGCTAGCTAATCTAAGGAAAATCGGCAGTTATTTAGTGGATATCCAAGGGCAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGCAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATACCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTGCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAGTTGCTGATGGATTAGCTGCAGGCTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGCGTTGGCTTGGCCGTTGCAGAATTGCAAGGGATCGCACATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGTTACAAGATGCAATCGGAGACATGAGTCGTCAAATCGATTTGTTGG
AGTTAGATGAGAACCGTTTAGAAGAAGTGACTCAACGTCTAGAATTAATCCGACAGTTGAAACGCAAATATGGCGAATCC
ATTGAGTCGATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTAAAAAGTCTGTATATGGAAAACACTGAGTTTGAAGTACGTTTCTTA
AAAGAAGAAAACAGACAATTGAATCATGATGGGTTTGACCAAATCGAATTCTACATTACGACCAATCCAGGAGAGCCGCT
GAAGCCTTTAGTGAAAGTCGCTTCTGGTGGCGAATTATCTCGGATGTTACTGGCTTTGAAAACGATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATCTTTGATGAAGTGGATACAGGTGTAAGTGGAAGAGTTGCACAAGCCATCGCGGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTACCGCAAGTCGCCGCAGTCGCCGACTATCAATATTA
TATCGTGAAAGCAGTGATTGATGGTCGTACGCAAACTTCTGTTTCAGAATTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGCATGCTAGCTGGAAGTGAGATTACAAAACTGACACTCGAACATGCAAAAGAACTATTGCAACTCGCAAGAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.5