Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   Y1U_RS00230 Genome accession   NC_017927
Coordinates   30579..31352 (+) Length   257 a.a.
NCBI ID   WP_002946256.1    Uniprot ID   Q5M6K1
Organism   Streptococcus thermophilus MN-ZLW-002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25579..36352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y1U_RS00210 (Y1U_C0023) - 25707..27131 (+) 1425 WP_014727280.1 CHAP domain-containing protein -
  Y1U_RS00215 (Y1U_C0024) - 27345..28310 (+) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  Y1U_RS09770 - 28359..29204 (-) 846 Protein_19 transposase -
  Y1U_RS00225 (Y1U_C0026) - 29417..30592 (+) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  Y1U_RS00230 (Y1U_C0027) recO 30579..31352 (+) 774 WP_002946256.1 DNA repair protein RecO Machinery gene
  Y1U_RS00235 (Y1U_C0028) plsX 31569..32573 (+) 1005 WP_014727281.1 phosphate acyltransferase PlsX -
  Y1U_RS00240 (Y1U_C0029) - 32573..32818 (+) 246 WP_014727282.1 phosphopantetheine-binding protein -
  Y1U_RS00245 (Y1U_C0030) purC 33103..33810 (+) 708 WP_014727283.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29830.05 Da        Isoelectric Point: 5.0766

>NTDB_id=43074 Y1U_RS00230 WP_002946256.1 30579..31352(+) (recO) [Streptococcus thermophilus MN-ZLW-002]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=43074 Y1U_RS00230 WP_002946256.1 30579..31352(+) (recO) [Streptococcus thermophilus MN-ZLW-002]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607

Multiple sequence alignment