Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HBA75_RS20670 Genome accession   NZ_CP050183
Coordinates   4114991..4115785 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus thuringiensis strain HER1410     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4113369..4125016 4114991..4115785 within 0


Gene organization within MGE regions


Location: 4113369..4125016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA75_RS20665 (HBA75_20680) - 4113369..4114598 (+) 1230 WP_086411350.1 IS110 family transposase -
  HBA75_RS20670 (HBA75_20685) spo0A 4114991..4115785 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  HBA75_RS20675 (HBA75_20690) spoIVB 4116076..4117374 (-) 1299 WP_086412470.1 SpoIVB peptidase -
  HBA75_RS20680 (HBA75_20695) recN 4117493..4119232 (-) 1740 WP_086412469.1 DNA repair protein RecN Machinery gene
  HBA75_RS20685 (HBA75_20700) - 4119503..4120933 (-) 1431 WP_001056973.1 IS4 family transposase -
  HBA75_RS20690 (HBA75_20705) - 4121166..4122602 (-) 1437 WP_062804561.1 IS4 family transposase -
  HBA75_RS20695 (HBA75_20710) argR 4122828..4123277 (-) 450 WP_001032580.1 arginine repressor ArgR -
  HBA75_RS20700 (HBA75_20715) - 4123787..4125016 (+) 1230 WP_086411350.1 IS110 family transposase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=430633 HBA75_RS20670 WP_011110369.1 4114991..4115785(-) (spo0A) [Bacillus thuringiensis strain HER1410]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=430633 HBA75_RS20670 WP_011110369.1 4114991..4115785(-) (spo0A) [Bacillus thuringiensis strain HER1410]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACCACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818