Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HBA75_RS00310 Genome accession   NZ_CP050183
Coordinates   63360..63644 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain HER1410     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 58360..68644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA75_RS00275 (HBA75_00275) - 58470..59297 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  HBA75_RS00280 (HBA75_00280) yabA 59312..59662 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  HBA75_RS00285 (HBA75_00285) - 59745..59909 (+) 165 WP_153579212.1 hypothetical protein -
  HBA75_RS00290 (HBA75_00290) - 60024..61253 (-) 1230 WP_086411350.1 IS110 family transposase -
  HBA75_RS00295 (HBA75_00295) - 61610..62218 (+) 609 Protein_45 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HBA75_RS00300 (HBA75_00300) - 62205..62495 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  HBA75_RS00305 (HBA75_00305) rsmI 62464..63339 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HBA75_RS00310 (HBA75_00310) abrB 63360..63644 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HBA75_RS00315 (HBA75_00315) metG 64103..66112 (+) 2010 WP_071732546.1 methionine--tRNA ligase -
  HBA75_RS00320 (HBA75_00320) - 66279..67046 (+) 768 WP_086411679.1 TatD family hydrolase -
  HBA75_RS00325 (HBA75_00325) rnmV 67261..67818 (+) 558 WP_000692836.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=430605 HBA75_RS00310 WP_000843036.1 63360..63644(-) (abrB) [Bacillus thuringiensis strain HER1410]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=430605 HBA75_RS00310 WP_000843036.1 63360..63644(-) (abrB) [Bacillus thuringiensis strain HER1410]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851