Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HBA21_RS10010 Genome accession   NZ_CP050148
Coordinates   2144510..2145145 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain AA43     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139510..2150145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA21_RS09995 (HBA21_10015) - 2140216..2141460 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  HBA21_RS10000 (HBA21_10020) - 2141548..2142081 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HBA21_RS10005 (HBA21_10025) comA 2142212..2144437 (+) 2226 WP_023115230.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HBA21_RS10010 (HBA21_10030) exbB 2144510..2145145 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HBA21_RS10015 (HBA21_10035) - 2145142..2145582 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  HBA21_RS10020 (HBA21_10040) lpxK 2145582..2146580 (+) 999 WP_112302940.1 tetraacyldisaccharide 4'-kinase -
  HBA21_RS10025 (HBA21_10045) - 2146618..2146803 (+) 186 WP_003091157.1 Trm112 family protein -
  HBA21_RS10030 (HBA21_10050) kdsB 2146803..2147567 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HBA21_RS10035 (HBA21_10055) - 2147567..2148031 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  HBA21_RS10040 (HBA21_10060) murB 2148028..2149047 (+) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -
  HBA21_RS10045 (HBA21_10065) - 2149232..2149525 (+) 294 WP_112302939.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=430373 HBA21_RS10010 WP_003091163.1 2144510..2145145(+) (exbB) [Pseudomonas aeruginosa strain AA43]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=430373 HBA21_RS10010 WP_003091163.1 2144510..2145145(+) (exbB) [Pseudomonas aeruginosa strain AA43]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCTTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81