Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HBA20_RS26680 Genome accession   NZ_CP050147
Coordinates   5642880..5643437 (+) Length   185 a.a.
NCBI ID   WP_019486632.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A5803     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5637880..5648437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA20_RS26660 (HBA20_26720) pilR 5639156..5640493 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  HBA20_RS26665 (HBA20_26725) thiO 5640539..5641633 (-) 1095 WP_003134931.1 glycine oxidase ThiO -
  HBA20_RS26670 (HBA20_26730) - 5641768..5642277 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  HBA20_RS26675 (HBA20_26735) - 5642383..5642889 (+) 507 WP_019486633.1 Tfp pilus assembly protein FimT/FimU -
  HBA20_RS26680 (HBA20_26740) pilV 5642880..5643437 (+) 558 WP_019486632.1 type 4a pilus minor pilin PilV Machinery gene
  HBA20_RS26685 (HBA20_26745) pilW 5643434..5644258 (+) 825 WP_058154737.1 type 4a pilus minor pilin PilW -
  HBA20_RS26690 (HBA20_26750) pilX 5644255..5644842 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HBA20_RS26695 (HBA20_26755) pilY1 5644854..5648339 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20086.26 Da        Isoelectric Point: 7.9204

>NTDB_id=430353 HBA20_RS26680 WP_019486632.1 5642880..5643437(+) (pilV) [Pseudomonas aeruginosa strain A5803]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPTSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=430353 HBA20_RS26680 WP_019486632.1 5642880..5643437(+) (pilV) [Pseudomonas aeruginosa strain A5803]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGACCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTTAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978