Detailed information NTG0043033

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CDCO157_RS18205
• Genome accession: NC_017906
• Coordinates: 3514752..3515744 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081579.1
• Uniprot ID: -
• Organism: Escherichia coli Xuzhou21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3509752..3520744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDCO157_RS18180 (CDCO157_3350)	pphB	3511114..3511770 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
CDCO157_RS18185 (CDCO157_3351)	-	3511811..3512047 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CDCO157_RS18190 (CDCO157_3352)	-	3512058..3513485 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CDCO157_RS18195 (CDCO157_3353)	-	3513485..3514078 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CDCO157_RS18200 (CDCO157_3354)	-	3514225..3514632 (+)	408	WP_000175365.1	MarR family winged helix-turn-helix transcriptional regulator	-
CDCO157_RS18205 (CDCO157_3355)	rpoS	3514752..3515744 (-)	993	WP_000081579.1	RNA polymerase sigma factor RpoS	Regulator
CDCO157_RS18210 (CDCO157_3356)	nlpD	3515807..3516901 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
CDCO157_RS18215 (CDCO157_3357)	pcm	3517086..3517712 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CDCO157_RS18220 (CDCO157_3358)	surE	3517706..3518467 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CDCO157_RS18225 (CDCO157_3359)	truD	3518448..3519497 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
CDCO157_RS18230 (CDCO157_3360)	ispF	3519494..3519973 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CDCO157_RS18235 (CDCO157_3361)	ispD	3519973..3520683 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37914.81 Da
• Isoelectric Point: 4.5916

>NTDB_id=43033 CDCO157_RS18205 WP_000081579.1 3514752..3515744(-) (rpoS) [Escherichia coli Xuzhou21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLGLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=43033 CDCO157_RS18205 WP_000081579.1 3514752..3515744(-) (rpoS) [Escherichia coli Xuzhou21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGGCCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712