Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HBA47_RS10735 Genome accession   NZ_CP050136
Coordinates   2046745..2048319 (+) Length   524 a.a.
NCBI ID   WP_019390472.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2041745..2053319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS10710 (HBA47_10765) - 2042513..2044639 (-) 2127 WP_032133026.1 type I secretion system permease/ATPase -
  HBA47_RS10715 (HBA47_10770) - 2044695..2044931 (-) 237 Protein_2115 transposase -
  HBA47_RS10720 (HBA47_10775) - 2045015..2045236 (-) 222 WP_060536923.1 IS5/IS1182 family transposase -
  HBA47_RS10725 (HBA47_10780) - 2045254..2045517 (-) 264 WP_154699942.1 transposase -
  HBA47_RS10730 (HBA47_10785) - 2045631..2046461 (-) 831 WP_208103201.1 DDE-type integrase/transposase/recombinase -
  HBA47_RS10735 (HBA47_10790) pilA 2046745..2048319 (+) 1575 WP_019390472.1 signal recognition particle-docking protein FtsY Machinery gene
  HBA47_RS10740 (HBA47_10795) lpxB 2048379..2049530 (-) 1152 WP_038302743.1 lipid-A-disaccharide synthase -
  HBA47_RS10745 (HBA47_10800) - 2049686..2049925 (+) 240 WP_019390470.1 hypothetical protein -
  HBA47_RS10750 (HBA47_10805) - 2049967..2050116 (-) 150 WP_019390469.1 hypothetical protein -
  HBA47_RS10755 (HBA47_10810) - 2050113..2050358 (-) 246 WP_051258231.1 helix-turn-helix transcriptional regulator -
  HBA47_RS10765 (HBA47_10820) - 2051301..2051456 (-) 156 WP_154699930.1 hypothetical protein -
  HBA47_RS10770 (HBA47_10825) - 2051458..2051673 (-) 216 WP_019388976.1 hypothetical protein -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 56680.68 Da        Isoelectric Point: 4.1800

>NTDB_id=430304 HBA47_RS10735 WP_019390472.1 2046745..2048319(+) (pilA) [Kingella kingae strain ATCC 23332]
MFNLFNKLFNRKAETPPNTEKEPEQVQAASAPETAPAVTNENVQAALSVETEVAQENTADEVPQAEAESTETAEENVQAA
LNAETEVAQENTVEAEPMRHSWATPVVEEVKETVQSAEQWAEDMAHAVAEKADELEMRAEILAEETSESVSHWAQGMAHA
VEEKLDELEMRAEILVDEAKEAVVESVQTLEHALEGENALPEPELLPEEPVAPEAEESLGWTARLARGLSKSRNQMAKSL
AGVFGGGKIDEDLYEELETVLITSDMGIEATEQLMNEVRNRVSLKGLKDGAELRSALKDAIYDLLKPLEQPLVLPDNGQP
FVIMMAGINGAGKTTSIGKLAKYFQSQGKSVMLAAGDTFRAAAREQLQEWGARNNITVISQEKGDSAAVCFDAVEAAKAR
KIDVVLADTAGRLPTQLHLMEEIKKVKRVLQKSMPDAPHEIMVVLDANIGQNAVNQVVAFDDALGVTGLIVTKLDGTAKG
GVLAALASSRAIPVRYIGVGESIDDLRPFNAKAFVDALLDEWSA

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=430304 HBA47_RS10735 WP_019390472.1 2046745..2048319(+) (pilA) [Kingella kingae strain ATCC 23332]
ATGTTTAATTTATTCAATAAACTGTTCAACCGGAAAGCCGAAACGCCGCCCAACACCGAAAAAGAACCAGAACAGGTGCA
GGCTGCTTCTGCGCCCGAAACTGCGCCTGCGGTTACCAATGAAAATGTGCAGGCTGCTTTGAGTGTAGAAACCGAAGTCG
CGCAAGAAAACACGGCAGATGAAGTACCACAAGCTGAAGCCGAAAGCACGGAAACCGCAGAAGAAAATGTGCAGGCTGCT
TTGAACGCAGAAACCGAAGTCGCACAAGAAAATACGGTTGAAGCAGAACCCATGCGCCATAGCTGGGCAACGCCTGTGGT
GGAAGAAGTCAAAGAAACGGTGCAATCTGCCGAGCAATGGGCGGAAGACATGGCGCACGCGGTGGCAGAAAAAGCCGATG
AATTGGAAATGCGTGCCGAAATCTTGGCAGAAGAAACCAGCGAAAGCGTGAGCCATTGGGCGCAAGGCATGGCACACGCG
GTAGAAGAAAAATTGGACGAGCTGGAAATGCGCGCCGAAATTTTGGTTGATGAAGCCAAAGAAGCAGTGGTGGAAAGCGT
GCAGACGTTGGAACACGCGCTGGAAGGCGAAAATGCGCTGCCCGAACCCGAATTGTTGCCCGAAGAGCCAGTCGCGCCTG
AAGCGGAAGAATCCTTGGGCTGGACGGCACGTTTGGCGCGTGGTTTGAGCAAATCGCGCAATCAAATGGCAAAGTCGTTG
GCTGGCGTGTTTGGCGGCGGCAAAATTGACGAAGATTTGTACGAAGAACTGGAAACGGTGCTGATTACCAGCGATATGGG
CATTGAAGCGACCGAACAGTTGATGAACGAAGTCCGCAATCGTGTGTCGCTCAAAGGCTTGAAAGACGGCGCGGAATTGC
GTTCGGCACTCAAAGACGCGATTTATGATTTGCTCAAACCATTGGAGCAGCCTCTGGTGTTGCCCGATAATGGTCAGCCG
TTTGTGATTATGATGGCTGGCATCAATGGCGCAGGCAAAACCACGTCTATTGGCAAATTGGCGAAGTATTTTCAATCGCA
AGGCAAAAGCGTGATGTTGGCGGCGGGCGATACCTTCCGTGCGGCGGCGCGTGAGCAGTTGCAAGAATGGGGTGCGCGAA
ACAATATTACCGTGATTTCGCAAGAAAAAGGCGACAGCGCGGCGGTGTGTTTTGATGCGGTGGAAGCGGCAAAAGCGCGT
AAAATTGACGTGGTGCTGGCGGACACGGCTGGACGTTTGCCAACGCAATTACACTTGATGGAAGAAATCAAAAAAGTGAA
GCGCGTGTTGCAAAAATCCATGCCCGATGCGCCACACGAAATCATGGTGGTGCTGGACGCGAACATCGGTCAAAACGCGG
TCAATCAAGTGGTGGCGTTTGACGATGCGTTGGGCGTAACAGGTTTGATTGTTACCAAGCTGGACGGCACGGCAAAAGGC
GGCGTGTTGGCGGCGTTGGCAAGCAGTCGTGCGATTCCCGTGCGCTATATTGGCGTGGGCGAGAGCATTGACGATTTGCG
CCCGTTCAATGCCAAAGCGTTTGTGGACGCGCTGTTGGACGAGTGGTCGGCATAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(236-300)

SRP54-type protein, GTPase domain (SRP54)

(320-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

68.974

79.962

0.552