Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HBA47_RS06375 Genome accession   NZ_CP050136
Coordinates   1195385..1196761 (-) Length   458 a.a.
NCBI ID   WP_019389202.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190385..1201761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS06360 (HBA47_06375) - 1191716..1194487 (+) 2772 WP_154700164.1 DNA methyltransferase -
  HBA47_RS06365 (HBA47_06380) - 1194487..1194678 (+) 192 WP_019389201.1 hypothetical protein -
  HBA47_RS06370 (HBA47_06385) - 1194788..1195126 (-) 339 WP_154700163.1 hypothetical protein -
  HBA47_RS06375 (HBA47_06390) radA 1195385..1196761 (-) 1377 WP_019389202.1 DNA repair protein RadA Machinery gene
  HBA47_RS06380 (HBA47_06395) - 1196844..1196987 (-) 144 WP_019389203.1 hypothetical protein -
  HBA47_RS06385 (HBA47_06400) - 1197064..1197312 (-) 249 WP_003789854.1 hypothetical protein -
  HBA47_RS06390 (HBA47_06405) proC 1197773..1198567 (+) 795 WP_019389204.1 pyrroline-5-carboxylate reductase -
  HBA47_RS06395 (HBA47_06410) - 1198603..1199361 (-) 759 WP_019389205.1 ATP-binding cassette domain-containing protein -
  HBA47_RS06400 (HBA47_06415) glnA 1199478..1200896 (-) 1419 WP_019389206.1 type I glutamate--ammonia ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49417.12 Da        Isoelectric Point: 7.6114

>NTDB_id=430293 HBA47_RS06375 WP_019389202.1 1195385..1196761(-) (radA) [Kingella kingae strain ATCC 23332]
MAKAPKIQFQCTECGGTTPKWVGKCPHCGEWNTLSEQLTAPEPKNARFQSWAAETTQVQELSKVTAMEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKKRKVLYVSGEESAQQVALRSQRLGLNADGVNLLAEIRLEAIQAA
LKQHEPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSYRNKPLPEKIVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANLPKNLKEFPSLKIQGVSSLQEAVNACRDWE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=430293 HBA47_RS06375 WP_019389202.1 1195385..1196761(-) (radA) [Kingella kingae strain ATCC 23332]
ATGGCAAAAGCCCCAAAAATCCAATTCCAATGCACCGAATGCGGTGGCACAACACCCAAATGGGTTGGCAAATGCCCGCA
TTGTGGCGAATGGAACACGCTTTCCGAACAGCTAACCGCACCCGAACCCAAAAACGCGCGTTTCCAATCATGGGCGGCGG
AAACCACGCAAGTGCAAGAATTATCCAAAGTTACCGCCATGGAAGTCCCACGCGAAGCCACTGGCATGGGCGAACTTGAT
CGCGTGTTGGGCGGCGGCTTGGTGGACGGTGCGGTCATTTTGCTCGGTGGCGACCCAGGTATTGGTAAATCTACATTGTT
GTTGCAAACCATTGCTTTAATGGCGAAAAAACGCAAAGTGCTGTATGTGTCGGGTGAGGAATCGGCGCAACAAGTGGCGT
TGCGTTCGCAGCGTTTGGGGCTGAATGCGGACGGTGTGAATTTGTTGGCGGAAATCCGTTTGGAGGCGATTCAGGCTGCC
TTAAAACAGCACGAGCCGTCTGTGGTCGTGATTGACTCGATTCAAACGATGTATTCTGACCAAATCACGTCCGCCCCTGG
CTCGGTGTCGCAGGTGCGCGAATGTGCGGCGCAACTGACGCGAATCGCTAAACAAATGGGCATTGCGATGATTTTTGTTG
GACACGTTACCAAAGACGGCGCGATTGCGGGTCCGCGCGTGTTGGAGCATATGGTGGACACGGTGCTGTATTTTGAGGGC
GACCAGCATTCCAATTACCGCATGATTCGGGCGATTAAAAACCGTTTTGGGGCGGCGAATGAATTGGGCGTGTTTGCGAT
GACGGAAACGGGCTTGAAAGGCGTTTCTAATCCGTCTGCGATTTTTTTGGCGAGCTATCGCGATGATGTGGCGGGTTCGT
GCGTGTTGGTTACGCAAGAGGGCAGTCGTCCGCTTTTGGTGGAAATTCAGGCACTTGTTGATGATGCGCACGGTTTCACG
CCGAAGCGTTTAACTGTGGGTTTGGAGCAAAACCGTCTTGCCATGTTGCTGGCGGTGCTGAATCGCCACGCTGGCATTGC
GTGTTTTGACCAAGATGTGTTTTTGAATGCGGTCGGCGGCGTGAAAATCAGCGAACCTGCGGCGGATTTGGCGGTAATTT
TGGCGATGTTGTCGAGCTATCGCAATAAGCCGCTGCCTGAAAAAATAGTGGCGTTTGGGGAAATTGGTTTGAGTGGCGAA
ATTCGTCCTGTGCCACGTGGGCAGGAGCGTTTGAAAGAAGCGGAGAAATTGGGCTTTAAACGGGCGATTGTGCCGAAAGC
GAATTTGCCGAAGAATTTAAAAGAGTTCCCAAGCCTGAAAATTCAAGGCGTAAGCAGCCTGCAAGAAGCGGTGAATGCTT
GTCGGGATTGGGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(79-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.345

0.5
  radA Streptococcus mitis SK321

48.786

98.908

0.483
  radA Streptococcus pneumoniae Rx1

48.246

99.563

0.48
  radA Streptococcus pneumoniae D39

48.246

99.563

0.48
  radA Streptococcus pneumoniae R6

48.246

99.563

0.48
  radA Streptococcus pneumoniae TIGR4

48.246

99.563

0.48
  radA Streptococcus mitis NCTC 12261

48.115

98.472

0.474