Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   HBA47_RS05405 Genome accession   NZ_CP050136
Coordinates   1002678..1003130 (+) Length   150 a.a.
NCBI ID   WP_019389048.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 997678..1008130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS05380 (HBA47_05395) - 997998..999155 (+) 1158 WP_003790548.1 glycerate kinase -
  HBA47_RS05385 (HBA47_05400) dapE 999193..1000317 (+) 1125 WP_154700207.1 succinyl-diaminopimelate desuccinylase -
  HBA47_RS05390 (HBA47_05405) - 1000383..1000742 (-) 360 WP_019389047.1 Mth938-like domain-containing protein -
  HBA47_RS05395 (HBA47_05410) - 1000842..1002149 (+) 1308 WP_003787017.1 homoserine dehydrogenase -
  HBA47_RS05400 (HBA47_05415) - 1002142..1002621 (+) 480 WP_154700206.1 hypothetical protein -
  HBA47_RS05405 (HBA47_05420) recX 1002678..1003130 (+) 453 WP_019389048.1 recombination regulator RecX Regulator
  HBA47_RS05410 (HBA47_05425) - 1003376..1003816 (+) 441 WP_003787024.1 CZB domain-containing protein -
  HBA47_RS05415 (HBA47_05430) - 1003997..1004245 (+) 249 WP_230311240.1 transposase family protein -
  HBA47_RS05420 (HBA47_05435) - 1004273..1004839 (+) 567 WP_060537076.1 ISAs1 family transposase -
  HBA47_RS05425 (HBA47_05440) lon 1005041..1007119 (+) 2079 WP_154700205.1 endopeptidase La -
  HBA47_RS05430 (HBA47_05445) - 1007310..1007612 (+) 303 WP_019389050.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17550.85 Da        Isoelectric Point: 9.8887

>NTDB_id=430289 HBA47_RS05405 WP_019389048.1 1002678..1003130(+) (recX) [Kingella kingae strain ATCC 23332]
MKTEKSLRARTMEMMSRREMSQAELRAKLLPHANDSDELDAVLAEFAKNNWQSDERFAEAFVRSKSSKHGAGRLRQELRQ
RGVSAELIQQYLPDRETELDNAIEVARKKFKQPAQNRQEWDKQMRFMLYRGFAMATAQAALKRAWADDEE

Nucleotide


Download         Length: 453 bp        

>NTDB_id=430289 HBA47_RS05405 WP_019389048.1 1002678..1003130(+) (recX) [Kingella kingae strain ATCC 23332]
ATGAAAACCGAAAAATCACTCCGCGCCCGAACGATGGAAATGATGTCGCGCCGTGAAATGAGCCAAGCCGAATTACGCGC
TAAATTGTTGCCCCACGCCAACGATAGCGATGAATTGGACGCGGTGTTGGCAGAATTTGCGAAAAACAACTGGCAATCGG
ACGAGCGATTTGCAGAAGCGTTTGTTCGCAGCAAAAGCAGTAAACACGGCGCAGGACGTTTGCGCCAAGAATTGCGACAA
CGCGGCGTATCGGCAGAATTGATTCAGCAATATTTGCCCGACCGCGAAACAGAATTGGATAACGCAATAGAAGTCGCCCG
CAAAAAATTCAAGCAGCCTGCACAAAATCGGCAGGAATGGGACAAGCAAATGCGTTTTATGTTGTATCGCGGTTTTGCAA
TGGCAACGGCGCAGGCTGCTTTGAAACGCGCTTGGGCAGACGATGAAGAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(34-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

54

100

0.54