Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC/pilC2   Type   Machinery gene
Locus tag   HBA47_RS01405 Genome accession   NZ_CP050136
Coordinates   262389..266912 (+) Length   1507 a.a.
NCBI ID   WP_154699957.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 257389..271912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS01385 (HBA47_01390) - 257944..258531 (-) 588 WP_019389762.1 FixH family protein -
  HBA47_RS01390 (HBA47_01395) ccoG 258535..259962 (-) 1428 WP_019389761.1 cytochrome c oxidase accessory protein CcoG -
  HBA47_RS01395 (HBA47_01400) - 260059..261339 (-) 1281 WP_154699959.1 valine--pyruvate transaminase -
  HBA47_RS01400 (HBA47_01405) - 261469..262176 (+) 708 WP_154699958.1 SAM-dependent methyltransferase -
  HBA47_RS01405 (HBA47_01410) pilC/pilC2 262389..266912 (+) 4524 WP_154699957.1 PilC/PilY family type IV pilus protein Machinery gene
  HBA47_RS01410 (HBA47_01415) mnmG 267217..269103 (+) 1887 WP_154699956.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  HBA47_RS01415 (HBA47_01420) - 269146..271263 (-) 2118 WP_154699955.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 1507 a.a.        Molecular weight: 164396.55 Da        Isoelectric Point: 8.0375

>NTDB_id=430281 HBA47_RS01405 WP_154699957.1 262389..266912(+) (pilC/pilC2) [Kingella kingae strain ATCC 23332]
MKPVSKKRISTQLRQLNKMLWVAFPLLSLPFYAQAENNTQFSNSSLTGIQKTYGPNVTLALSVEFPTAGAAYSTATEFTD
AMMSQTFLGYFDNTKCYKYVAPNDPDGMKAFADNGYSQYSGSDNVSKDKNGPLLAPDGTRALAGKRRPWIVYYDGRRLSI
PDSVRSNNMLYESIRQKEFFLHDSMDAGSDDSMGTSGAVNHRYETKEREYFQPTRTASTSNGMVGVCDGPNEFSGNFMNW
ATMSAIDIFRQAMTGGNRALGVAKDTTAYEAGDTQTQTFLRRANVVREQNAHYMQRTVALSEENIKKVLPHDYAVDGVNP
LLANYGKELPSNKFFLYKGYIPHPYAYRIGLNSIGRWEEETQQTKIKAMMGRVTLATHRPLLVRNSGFGVDFRRAVYDTS
NKGWYNNVFSRDKWSPHTDWWSRVTWIGNINDGQNGRYWAPVKSRVMPYQVTVEACVPGKLEANCVRQPSGSYKPEGLMQ
QNASTMRFAAFGYANIAGNTVSGGVLRSRMRYIANPNKDGATATGPAVKYQEEINPKTGQFYVNPDRNAEGTAQQAFTVS
TDKTSASSNFENSGTINYLNKFGDYNNYKTNDPGAELYYTALRYLRNAGFPALYQSKLTEAAGAAGITRDVRDNFPLITD
NWDNPLNVFSDNTTLNVADNVCRPNYIIYIGDTNTHFDASLPSSNWGYYFGSAASADSNVTDDSAVDVGRLIHDKITPNE
PWLNWFNGNWGADASPGGAMAALALWGRTNNLQPNFGKRLSSFMIDTVEDGKFKPEKNNYWLAAKYGGFNDLNNNGVPDK
GEWEATSASDKVSAFEAPAVSNGTPQNFAVANNPTSMVAALNRAFEATATAEAPSATSLGTTSTKPLSERGKTMLLQSVF
RDATTVVDGARVKVASGDVLGLEATLKGHKLEYEKKWSAGEKLQAAYHNETGWQKRKVFTRVSKDTQAVPLLANDAGVAT
ATGAGADAADLINYTLGAPTYENGRKFRIRPNHLMGTVINSPVVTIPSRTGSVSTVAGSCTYPASANISSRPNRHVVAAN
DGMFYVLDKEGNEIASYMPSTALPLLKKYASTDYSHFFMNDGIAATSEVCFDKGDGNAHTVVVGTAGRGGNSVYALDLTN
PTTLEAKDMLWEFTDAGLGKSLFAPIITHDNTGTPVAIVSGGYNADVDTGYIYVLKLNKSAGEAWSEDVSIDPNAKPWQH
GNWYRIKLGAGGVGELFAYQNEARTVAAVYGGDLAGNLWKVSQNAAGRFVAGYVDSANNTLPIFKTADKTSIVGAPFAQI
VGGKTYVVFITGRYFNKSDLPSTTKPVQNYAYGIIESKIGDNRTPTGSGALIADGDNLLQQSVNEQIVPDSVPQTVFYKV
TNHQITNQHQGWKLKLQQNWLSIDKSAIRGKRVAEFSAVNPLATDVASAGNMCTENGSTYSLSVNVFNGGVYNKPIYDTN
GDGKFTEADTLVSVAGQAGILTRLTEVSTEFGRIVGGINSMGNMIQMPKDNITSDPVVKRVSWREIF

Nucleotide


Download         Length: 4524 bp        

>NTDB_id=430281 HBA47_RS01405 WP_154699957.1 262389..266912(+) (pilC/pilC2) [Kingella kingae strain ATCC 23332]
ATGAAGCCAGTAAGCAAAAAGCGTATTTCAACGCAACTGCGCCAGCTCAATAAAATGCTGTGGGTAGCCTTTCCTTTGCT
ATCCTTGCCTTTTTATGCCCAAGCAGAAAACAATACCCAGTTTTCTAATTCATCATTAACAGGTATTCAAAAAACCTACG
GACCAAACGTAACATTGGCTTTGTCGGTGGAGTTTCCAACTGCAGGTGCGGCGTATTCTACAGCAACCGAATTTACTGAT
GCCATGATGAGCCAAACCTTTTTGGGCTATTTCGACAACACCAAATGCTATAAATACGTTGCGCCAAATGACCCAGACGG
TATGAAGGCGTTTGCTGATAATGGTTATAGTCAATACAGTGGCTCGGATAATGTATCCAAGGATAAGAATGGACCATTAC
TTGCGCCCGATGGTACGCGAGCGTTGGCGGGTAAACGGCGCCCATGGATAGTCTATTATGATGGACGCAGACTCAGTATT
CCGGATTCAGTACGCAGCAACAATATGCTTTATGAATCAATACGACAGAAAGAATTCTTCTTGCATGATAGTATGGATGC
TGGTTCGGATGATAGTATGGGTACCAGTGGTGCAGTTAATCATAGATATGAAACGAAAGAGCGAGAATATTTCCAACCAA
CACGAACCGCCAGTACAAGCAATGGCATGGTGGGTGTTTGTGATGGTCCAAATGAATTTAGTGGTAACTTCATGAACTGG
GCAACCATGTCGGCGATTGATATTTTCCGTCAAGCGATGACAGGTGGTAACCGTGCGCTGGGTGTTGCAAAAGACACAAC
CGCTTATGAGGCAGGCGATACGCAAACGCAAACGTTCTTGCGCCGTGCTAATGTGGTGCGTGAACAAAATGCGCACTATA
TGCAGCGTACAGTGGCTTTAAGTGAAGAGAATATCAAAAAAGTCTTGCCACACGATTATGCTGTGGACGGGGTAAATCCT
CTTTTGGCGAATTATGGTAAGGAATTGCCAAGTAATAAGTTTTTCTTATACAAGGGTTATATTCCACACCCATACGCATA
TCGTATTGGGTTGAATTCAATAGGGCGGTGGGAAGAGGAAACTCAACAAACCAAAATTAAGGCAATGATGGGTAGAGTTA
CATTGGCGACTCATCGCCCATTGCTTGTACGTAACTCTGGTTTTGGCGTGGATTTCCGCCGTGCTGTTTATGACACATCA
AATAAGGGTTGGTATAATAATGTGTTTAGTCGGGATAAGTGGAGTCCACACACCGATTGGTGGAGTCGTGTTACTTGGAT
TGGTAACATCAACGATGGTCAAAATGGTCGCTATTGGGCGCCTGTTAAATCGCGTGTAATGCCTTATCAAGTGACCGTAG
AAGCGTGTGTGCCAGGCAAATTGGAAGCCAACTGCGTGCGTCAGCCATCTGGTTCGTATAAGCCAGAGGGTTTGATGCAA
CAAAACGCATCAACCATGCGTTTTGCAGCATTTGGTTACGCCAATATTGCAGGTAATACCGTGAGTGGTGGTGTGTTACG
TAGCCGTATGCGTTATATCGCCAATCCAAATAAAGATGGAGCAACGGCAACAGGACCAGCTGTAAAATACCAAGAAGAGA
TTAACCCAAAAACAGGTCAGTTCTATGTGAACCCAGACCGTAACGCCGAAGGTACAGCACAGCAAGCGTTTACTGTTAGC
ACAGATAAAACATCGGCATCTTCTAATTTTGAAAATTCGGGCACGATTAACTATCTGAACAAGTTTGGTGATTACAACAA
CTATAAAACCAATGACCCTGGCGCAGAGTTGTATTACACCGCGTTACGTTATTTGCGTAATGCAGGTTTCCCTGCATTGT
ATCAAAGCAAGCTAACCGAAGCGGCTGGTGCTGCTGGTATTACAAGAGATGTTCGTGATAACTTCCCATTGATTACCGAC
AATTGGGATAACCCATTAAACGTGTTCAGCGACAACACTACTTTGAATGTGGCGGATAACGTGTGTCGTCCAAACTATAT
TATCTATATTGGTGATACCAATACCCACTTTGATGCTTCATTGCCCAGCAGTAACTGGGGATATTATTTTGGCAGTGCGG
CATCAGCCGATTCTAACGTAACCGATGATAGTGCCGTTGACGTGGGTAGATTGATTCACGATAAAATCACACCAAACGAA
CCTTGGTTGAATTGGTTTAATGGCAACTGGGGTGCAGATGCATCACCAGGTGGCGCAATGGCGGCATTGGCGTTGTGGGG
TCGAACCAACAATTTGCAGCCGAATTTTGGTAAGCGTTTAAGTAGCTTTATGATTGATACGGTTGAGGATGGTAAATTTA
AACCTGAGAAGAATAACTATTGGTTGGCAGCCAAATACGGTGGCTTCAACGATTTAAATAATAATGGTGTACCTGATAAA
GGCGAATGGGAAGCAACTTCCGCTTCGGATAAAGTGTCGGCATTTGAAGCACCAGCGGTGTCTAATGGTACGCCACAGAA
CTTTGCGGTAGCCAACAACCCAACTTCAATGGTAGCAGCATTGAACCGTGCGTTTGAAGCCACAGCCACAGCCGAAGCAC
CATCTGCAACCAGCTTGGGCACAACTAGCACCAAACCTTTGTCAGAACGCGGTAAAACTATGTTGTTGCAATCCGTGTTC
CGCGACGCAACCACTGTGGTAGATGGTGCGCGTGTTAAAGTGGCATCGGGCGATGTGTTGGGATTGGAAGCAACCTTAAA
AGGTCATAAGTTGGAGTACGAGAAAAAATGGTCGGCTGGCGAAAAATTGCAGGCTGCTTATCACAATGAGACTGGCTGGC
AAAAACGCAAAGTCTTTACTCGTGTGAGCAAAGATACACAGGCTGTTCCATTGTTGGCAAATGACGCGGGTGTAGCCACT
GCAACAGGCGCAGGAGCTGATGCGGCTGACTTGATTAACTACACATTGGGTGCGCCAACGTATGAAAATGGCAGAAAATT
CCGTATTCGTCCAAACCATTTGATGGGTACAGTGATTAACTCACCAGTAGTAACCATTCCATCACGCACAGGCAGCGTTA
GCACCGTGGCAGGTAGCTGTACTTATCCTGCATCTGCCAATATTAGCTCGCGTCCTAATCGTCATGTGGTAGCAGCCAAT
GATGGTATGTTCTATGTGTTGGATAAAGAAGGTAACGAGATTGCATCGTATATGCCATCAACTGCATTGCCATTGCTGAA
AAAATATGCCAGCACCGATTACTCACATTTCTTTATGAATGATGGTATTGCCGCTACTTCTGAAGTATGTTTTGACAAGG
GTGATGGCAATGCGCATACGGTAGTAGTTGGCACAGCAGGTCGTGGTGGTAACAGCGTGTATGCGTTGGATTTGACCAAC
CCAACTACTTTGGAAGCCAAAGATATGCTGTGGGAATTCACAGATGCTGGTTTGGGTAAGAGCTTGTTTGCACCAATTAT
CACGCATGACAATACAGGCACACCTGTGGCGATTGTGAGTGGTGGCTACAATGCCGATGTGGATACAGGTTATATCTATG
TTCTAAAATTGAACAAATCTGCTGGTGAAGCATGGAGTGAAGATGTTTCTATCGACCCAAATGCGAAGCCATGGCAACAT
GGTAACTGGTATCGCATTAAACTGGGTGCTGGTGGTGTAGGTGAATTGTTTGCTTACCAAAATGAAGCACGCACCGTTGC
AGCTGTGTATGGTGGCGATTTGGCAGGTAATTTGTGGAAGGTATCGCAAAATGCCGCAGGTCGCTTTGTAGCGGGTTATG
TGGATAGCGCAAATAATACGTTGCCTATCTTCAAAACAGCAGACAAGACATCTATTGTGGGTGCGCCTTTTGCACAAATC
GTAGGTGGTAAAACGTATGTTGTGTTTATTACTGGTCGCTACTTCAACAAGAGCGATTTGCCTAGCACAACCAAACCAGT
ACAAAACTACGCATACGGTATCATCGAGAGCAAAATCGGCGATAACCGCACGCCAACTGGTAGCGGTGCATTGATTGCAG
ACGGTGATAATTTGTTGCAACAAAGCGTGAATGAGCAAATTGTTCCAGATAGCGTGCCACAAACTGTGTTCTATAAGGTT
ACGAATCACCAAATTACCAACCAGCATCAAGGTTGGAAGTTGAAATTGCAACAAAATTGGTTGAGTATCGATAAGAGTGC
GATTCGCGGCAAACGTGTTGCAGAATTTAGCGCAGTGAATCCGTTGGCGACCGATGTGGCTAGTGCTGGTAATATGTGTA
CCGAAAACGGTTCGACTTATTCGTTGTCAGTTAATGTGTTCAATGGTGGTGTGTACAACAAACCTATCTATGACACAAAC
GGCGATGGTAAGTTTACCGAAGCGGATACTTTGGTATCTGTGGCTGGTCAGGCTGGTATTTTGACTCGCTTAACCGAAGT
TTCTACTGAGTTCGGTCGTATTGTTGGCGGTATCAACAGTATGGGTAACATGATTCAAATGCCAAAAGACAATATCACCA
GCGACCCTGTGGTGAAACGTGTATCTTGGCGCGAGATTTTCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(995-1346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC/pilC2 Kingella kingae strain KK03

85.271

100

0.857