Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC/pilC2   Type   Machinery gene
Locus tag   HBA48_RS08800 Genome accession   NZ_CP050135
Coordinates   1694665..1699173 (-) Length   1502 a.a.
NCBI ID   WP_166503294.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689665..1704173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS08790 (HBA48_08830) - 1690313..1692430 (+) 2118 WP_208103115.1 M3 family metallopeptidase -
  HBA48_RS08795 (HBA48_08835) mnmG 1692473..1694359 (-) 1887 WP_003789157.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  HBA48_RS08800 (HBA48_08840) pilC/pilC2 1694665..1699173 (-) 4509 WP_166503294.1 PilC/PilY family type IV pilus protein Machinery gene
  HBA48_RS08805 (HBA48_08845) - 1699388..1700095 (-) 708 WP_003789153.1 SAM-dependent methyltransferase -
  HBA48_RS08810 (HBA48_08850) - 1700224..1701504 (+) 1281 WP_003789151.1 valine--pyruvate transaminase -
  HBA48_RS08815 (HBA48_08855) ccoG 1701601..1703028 (+) 1428 WP_003787256.1 cytochrome c oxidase accessory protein CcoG -
  HBA48_RS08820 (HBA48_08860) - 1703032..1703619 (+) 588 WP_003789148.1 FixH family protein -

Sequence

Protein


Download         Length: 1502 a.a.        Molecular weight: 164176.34 Da        Isoelectric Point: 8.1768

>NTDB_id=430272 HBA48_RS08800 WP_166503294.1 1694665..1699173(-) (pilC/pilC2) [Kingella kingae strain ATCC 23331]
MKPASKKRISTQLRQLNKMLWVAFPLLSLPFYAQAENKTLFSDSSLTGIQKTYGPNIALALSVEFPTAGAAYSTATEFTD
AMMSQTFLGYFDNTKCYEYVAPNDRDGMKAFADNGYKQNSGSDNVSKDKYGTPLLAPDGTQALAGKQRSWIFDYDGRRFD
IPDTARRNNMLYESIRQKEFFLYDSHDSIATSGAVNHKYETKEQEYFHPTRTASTSNGMVGVCDGPNEFSGNFMNWATMS
AIDIFRQAMTGGNRALGVAKDTTAYQLGDTPEQTFLRRANVVRAQNANYMQRTVRLSEANIKKVLPHDYAVDKLNPILAD
YGQELSSNKFFLYKGYVPHPYAYRMRLDTRWQWEDETKKTNIKAMTGKVTLATDRPLLVRNSGFGVDFRRSIRDVSGNGW
YHQAFRRDYWSSGRDWRGATWLGDINDGGNGRYWAPVKSRVMPYQVTVEACVPGKLEANCVRQPSGSYKPEGLMQQNAST
MRFAAFGYANIAGNTVSGGVLRSRMRYIANPNRDGAAAAGPAVKYQEEIDPHTGQFYLNPDRNAEGPAQQAFTVNTDKKS
PSPNFDNSGTINYLNKFGDYNNYKTNDPGAELYYTALRYLRHAGFPALYKNKLIEAAGTAGITKEVRDNFPLITDNWDNP
LNVFSDNTTLNVADNVCRPNYIIYIGDTNTHADASLPGGGNTPYDSNVDDDRDIHVRNLIDEKIKPNEPRLSWWNDNWGA
DASPGGAMAALALWGRTHDLQPDFGKRLSSFMIDTVEDGDFKASAGGKNNNYWLAAKYGGFNDLNKNGLPDVGEWETTVN
SNKVDAFEGRASLYKGTPSNYAAANNPTSMVAALNRAFEATAIAEAPSATSLGTTSTKPLSEGGKTMLLQSVFRDATTVV
NGARVKVASGDVLGLEATLKGHKLEYEKKWSAGEKLQAAYHNANGWTNRKVFTRANANSGAVRLQGSNNAVTSVVGGSDA
ADLVNYALGAPTYEDGRKFRIRPNHLMGTVINSPVVTIPSRTGSVSTVAGSCTYPASANISSRPNRHVVAANDGMFYVLD
KEGNEIASYMPSTALPLLKKYASTDYSHFFMNDGIAATSEVCFDTGNGKGDGKAHTVVVGTAGRGGNSVYALDLTDPTTL
EAKDMLWEFTDAGLGKSLFAPIITHDNTGTPVAIVSGGYNADVDTGYIYVLKLNKPVGEQWREDTHPTTPWGSGGNWYRI
KLGAGGVGELFAYQTEARTVAAVYGGDLEGKLWKVSQNAEGRFVAGYADKSTGANLPIFKTAGGTSIVGAPFAQIVGGKT
YVVFITGRYFNKSDLPSTTKTVQNYAYGIIESKIGDNRALKSNGALIDDSTNLLQQSVNEQIVPDSVPQTVFYKVTDNKI
EPKHEGWKLKLQQNWLSIDKSAIRGKRVAEFSAVNPLATDVASAGNMCTENGSTYSLSVNVFNGGVYNKPIYDTNGDGKF
TEADTLVSVAGQAGILTRLTEVSTEFGRIVGGINSMGNMIQMPKDNITSDPVVKRVSWREIF

Nucleotide


Download         Length: 4509 bp        

>NTDB_id=430272 HBA48_RS08800 WP_166503294.1 1694665..1699173(-) (pilC/pilC2) [Kingella kingae strain ATCC 23331]
ATGAAGCCAGCAAGCAAAAAGCGCATTTCAACGCAACTGCGCCAGCTCAATAAAATGCTGTGGGTAGCCTTTCCTTTGCT
ATCCTTGCCTTTTTATGCACAAGCAGAAAACAAAACCCTTTTTTCTGATTCATCATTAACAGGTATTCAAAAAACCTACG
GCCCGAATATTGCCTTGGCTTTGTCGGTGGAGTTCCCGACTGCGGGTGCAGCTTATTCAACTGCAACCGAATTTACCGAT
GCTATGATGAGTCAAACCTTTTTGGGCTATTTCGACAACACTAAATGCTATGAATACGTTGCGCCAAATGACCGAGACGG
TATGAAGGCGTTTGCTGATAATGGCTATAAGCAAAATAGTGGCTCAGATAATGTATCCAAGGATAAGTATGGTACACCAT
TGCTTGCGCCCGATGGTACGCAAGCGTTGGCGGGTAAACAGCGCTCATGGATATTCGATTATGATGGACGCAGGTTCGAT
ATTCCGGACACAGCACGCAGAAACAATATGCTTTATGAATCAATACGACAGAAAGAATTCTTCTTGTATGATAGTCATGA
TAGTATAGCTACCAGCGGTGCAGTTAATCATAAATATGAAACGAAAGAGCAAGAATATTTCCATCCAACACGAACCGCCA
GTACAAGCAATGGCATGGTGGGTGTTTGTGATGGTCCAAATGAATTTAGTGGTAACTTCATGAACTGGGCAACCATGTCG
GCGATTGATATTTTCCGTCAAGCGATGACAGGTGGTAACCGTGCGCTGGGTGTTGCAAAAGACACAACAGCTTATCAATT
AGGTGATACGCCCGAGCAAACGTTCTTGCGCCGTGCTAATGTGGTGCGCGCACAAAATGCGAACTATATGCAGCGCACAG
TTCGATTAAGTGAAGCCAATATCAAAAAAGTCTTGCCACACGATTATGCAGTAGATAAACTCAATCCTATTTTGGCAGAC
TATGGTCAAGAATTGTCAAGTAATAAGTTTTTCTTATACAAGGGTTATGTGCCACACCCATACGCATATCGTATGCGGTT
GGATACAAGATGGCAGTGGGAAGATGAAACTAAAAAAACCAACATTAAGGCAATGACAGGTAAAGTTACATTGGCGACTG
ATCGCCCATTGCTTGTACGCAACTCTGGTTTTGGCGTGGATTTCCGCCGTAGTATTCGCGACGTATCAGGTAATGGTTGG
TATCACCAAGCGTTTCGTCGGGATTATTGGAGTTCAGGCCGCGATTGGCGGGGTGCTACTTGGCTTGGTGACATCAACGA
TGGTGGAAATGGTCGCTATTGGGCGCCTGTTAAATCGCGTGTAATGCCTTATCAAGTAACCGTAGAAGCGTGTGTGCCAG
GCAAATTGGAAGCCAACTGCGTGCGTCAGCCATCTGGTTCGTATAAGCCAGAAGGTTTGATGCAACAAAACGCGTCAACC
ATGCGTTTTGCAGCATTTGGTTACGCCAATATTGCAGGTAATACCGTGAGTGGTGGTGTGTTACGTAGCCGTATGCGTTA
TATCGCCAATCCAAATAGAGATGGAGCGGCGGCAGCAGGACCAGCTGTAAAATACCAAGAAGAGATTGACCCTCATACAG
GTCAATTTTATTTGAACCCAGACCGTAACGCCGAAGGTCCAGCGCAGCAAGCGTTTACTGTTAACACAGATAAAAAATCG
CCATCTCCTAATTTTGACAATTCGGGCACGATTAATTATCTGAACAAGTTTGGTGACTACAACAACTATAAAACCAATGA
CCCTGGTGCAGAGTTGTATTACACCGCATTGCGCTATTTGCGTCATGCAGGTTTCCCAGCGTTGTACAAAAACAAATTAA
TCGAAGCGGCTGGTACTGCGGGCATTACAAAAGAGGTTCGCGATAACTTCCCATTGATTACCGACAATTGGGATAACCCA
TTAAACGTGTTCAGCGACAACACTACTTTGAATGTAGCGGATAACGTGTGTCGTCCAAACTATATTATCTATATTGGTGA
TACCAATACCCACGCTGATGCTTCATTGCCTGGCGGTGGGAATACGCCATACGATTCCAATGTGGATGACGACCGAGACA
TTCATGTGCGTAACTTGATTGACGAGAAAATCAAACCAAACGAACCTAGGTTGAGTTGGTGGAATGACAACTGGGGTGCA
GATGCATCACCAGGTGGCGCAATGGCGGCGTTGGCGTTGTGGGGTCGAACCCACGATTTGCAGCCGGATTTTGGTAAGCG
TTTAAGTAGCTTTATGATTGATACGGTTGAGGATGGTGACTTTAAAGCATCGGCAGGAGGTAAGAATAATAACTACTGGT
TAGCAGCCAAATACGGTGGTTTCAATGATTTGAATAAAAATGGTCTTCCAGACGTAGGCGAATGGGAAACGACGGTTAAT
TCAAATAAAGTTGACGCATTTGAGGGCAGGGCTAGCCTTTATAAAGGTACGCCATCAAACTACGCAGCTGCCAACAACCC
AACTTCAATGGTGGCAGCATTGAACCGTGCGTTTGAAGCCACAGCCATAGCCGAAGCACCTTCTGCAACCAGCTTGGGCA
CAACTAGCACCAAACCTTTGTCAGAAGGCGGTAAAACTATGTTGTTGCAATCGGTGTTCCGCGATGCAACCACTGTGGTA
AATGGTGCGCGTGTTAAAGTGGCATCGGGCGATGTGTTGGGATTGGAAGCAACCTTAAAAGGTCATAAGTTGGAGTACGA
GAAAAAATGGTCGGCTGGCGAAAAATTGCAGGCTGCTTATCACAATGCAAATGGTTGGACAAATCGTAAGGTGTTTACTC
GTGCTAACGCCAATAGCGGTGCAGTTCGTTTGCAAGGTAGCAATAATGCAGTTACGAGCGTTGTAGGTGGCTCAGATGCA
GCAGATTTGGTTAATTACGCTTTGGGTGCACCAACGTATGAAGATGGCAGAAAATTCCGTATTCGTCCAAACCATTTGAT
GGGTACAGTGATTAACTCGCCAGTAGTAACCATTCCATCACGCACAGGCAGCGTTAGCACCGTGGCAGGTAGCTGTACTT
ATCCTGCATCTGCCAATATTAGCTCGCGTCCTAATCGTCATGTGGTAGCAGCCAATGATGGTATGTTCTATGTGTTGGAT
AAAGAAGGTAACGAGATTGCATCGTATATGCCATCAACTGCATTGCCATTGCTGAAAAAATATGCCAGCACCGATTACTC
ACATTTCTTTATGAATGACGGTATCGCCGCTACTTCTGAAGTATGTTTTGACACGGGTAATGGCAAGGGTGATGGCAAGG
CGCATACGGTAGTAGTTGGCACAGCAGGTCGCGGTGGTAACAGCGTGTATGCGTTGGATTTGACTGACCCAACTACTTTG
GAAGCCAAAGATATGCTGTGGGAATTCACAGATGCTGGTTTGGGTAAGAGCTTGTTTGCACCAATTATCACGCATGACAA
TACAGGCACACCTGTGGCGATTGTGAGTGGTGGCTACAATGCCGATGTGGATACAGGTTATATCTATGTTCTAAAATTGA
ACAAACCTGTTGGCGAACAATGGCGCGAAGATACGCACCCAACCACGCCTTGGGGTAGTGGCGGTAACTGGTATCGCATT
AAACTGGGTGCTGGTGGCGTAGGCGAATTGTTTGCTTACCAAACCGAAGCACGCACCGTTGCAGCTGTGTATGGTGGCGA
TTTAGAAGGCAAGCTGTGGAAGGTATCGCAAAATGCCGAAGGTCGCTTTGTAGCGGGTTATGCAGATAAATCGACAGGCG
CAAACTTGCCTATCTTCAAAACTGCAGGTGGTACATCTATCGTAGGTGCGCCTTTTGCACAAATCGTAGGTGGTAAAACG
TATGTTGTGTTTATTACTGGTCGCTACTTCAACAAGAGCGATTTGCCTAGCACAACCAAAACAGTACAAAACTACGCATA
CGGCATTATCGAGAGCAAAATCGGCGATAACCGCGCACTTAAATCTAACGGTGCGTTGATTGACGATAGCACTAACTTGT
TGCAACAAAGCGTGAATGAGCAAATCGTTCCAGACAGCGTGCCACAAACTGTGTTCTACAAAGTTACCGATAACAAAATC
GAGCCGAAACACGAAGGCTGGAAGCTGAAACTGCAACAAAACTGGTTGAGTATCGATAAGAGTGCGATTCGCGGCAAACG
TGTTGCAGAATTTAGCGCAGTGAATCCGTTGGCGACCGATGTGGCTAGTGCTGGTAATATGTGTACCGAAAACGGTTCGA
CTTATTCGTTGTCAGTTAATGTGTTCAATGGTGGTGTGTACAACAAACCTATCTATGACACAAACGGCGATGGTAAGTTT
ACCGAAGCGGATACTTTGGTATCTGTGGCTGGTCAGGCTGGTATTTTGACTCGCTTAACCGAAGTTTCTACCGAGTTCGG
TCGTATTGTTGGCGGTATCAACAGTATGGGTAACATGATTCAAATGCCAAAAGACAATATCACCAGCGACCCTGTGGTGA
AACGTGTATCTTGGCGCGAGATTTTCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(987-1341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC/pilC2 Kingella kingae strain KK03

86.879

100

0.873