Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC/pilC1   Type   Machinery gene
Locus tag   HBA48_RS08010 Genome accession   NZ_CP050135
Coordinates   1538447..1542496 (-) Length   1349 a.a.
NCBI ID   WP_003789470.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1533447..1547496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS10815 - 1535872..1536096 (+) 225 WP_164538055.1 hypothetical protein -
  HBA48_RS07995 (HBA48_08030) - 1536192..1537511 (-) 1320 WP_003789478.1 metabolite/H+ symporter -
  HBA48_RS08000 (HBA48_08035) - 1537677..1538030 (-) 354 WP_003789477.1 RidA family protein -
  HBA48_RS08005 (HBA48_08040) - 1538108..1538398 (-) 291 WP_080571731.1 transposase -
  HBA48_RS08010 (HBA48_08045) pilC/pilC1 1538447..1542496 (-) 4050 WP_003789470.1 PilC/PilY family type IV pilus protein Machinery gene
  HBA48_RS08020 (HBA48_08055) - 1543016..1544779 (-) 1764 WP_003789469.1 ABC transporter ATP-binding protein/permease -
  HBA48_RS08025 (HBA48_08060) - 1544889..1545752 (-) 864 WP_003789468.1 DegV family protein -
  HBA48_RS10970 - 1545998..1546270 (+) 273 WP_338073315.1 LysR family transcriptional regulator -
  HBA48_RS10975 - 1546301..1546510 (+) 210 WP_317980580.1 hypothetical protein -
  HBA48_RS08035 (HBA48_08070) - 1546513..1547217 (-) 705 WP_164538002.1 IS1 family transposase -

Sequence

Protein


Download         Length: 1349 a.a.        Molecular weight: 147168.79 Da        Isoelectric Point: 7.8552

>NTDB_id=430269 HBA48_RS08010 WP_003789470.1 1538447..1542496(-) (pilC/pilC1) [Kingella kingae strain ATCC 23331]
MSLKCKKYNCNLKPLSIGVSLALSSFAAMAADSPFAIAPQHLSSTATIRKTTVTTPHTDIHKQQQSVTNTTVRGMQGAKP
NIMLVLDDSGSMTERAGRSTRQQILQNSLANIVKKYNNQVNWGIKAFNNTSRRYSVPIGTDADKVHSLIKTFPADGTTPT
ITTYIEAADDLNKAIKYRCQKNYLVMVSDGDSNFSTYLPDNTGVEYSRRTYNRGLLPSFHYPQWLAINQKLNEFDFWKKI
FKSSAYNRTYTKNSSKFLSMCNPAYLTARSPYTKQAQKYEQYICDNLPQEFAYYPYSGITDGLFYNFYYVKGLTPIQGLT
SNLDLLNNREVKYQRTGQAPIFPLAHLTAYSGDMLGYLSEPLFQTDLRTASDGTDAAGKSWDSSDFPNQNITTFTIGFGT
GLSQYGLSLLQGGASTIRIKDPITKQMISQKAYYSATDENSLQKAFDSIFNQIERENPPPSNSNPIDLPPTTNTLPISTP
TAGTPNRQQSVMAETSYATSPPSATGASNSIPNMAASVFVPAGLKSSELRFYALNSKAQADTSSWSVADFSQRKALIRTD
SGVHWVRDASLNNTFFGLSAEMQTPQRTDEWNKALLPWTTRTVEGSDDSKIKAMNYPTPYRIRPIPPTDSPRNTVVDEYN
MGDVLDTPIVATGKNGIEQGNRQEFLITAANDGMVYLFQSNPDINAKNPYSLKLNYLPATMPRQTLTDTHATHYKDLAHE
GYAKDSARPHLFMINGGITVRTTSAKSNRQNTFMVGALGQGGRGMYALNIGGKALDSGNAIGLNAEDSTWNTSVPLYESN
PNNSTDFSSLGYTVGYPQIGRIAKYNTDGSLSDNSLKTGVYYASFLSSGFSSLNASQETALYIQDALGVDVGGGANTAAT
ANGNTKGKLLAKVVVPGGVGGLASPTLLDVNRDGVYDFVFAGDYGGNMYRFDLRKIDLSNGTVTDGAVKKIYSGSTTQPI
TSAPAISMQKNGRYVVAFGTGSDMYASDYNSTAEQAVYGIYQRFNERLDPIDINNPTAAETITPLTAGNLLEQTLTTATA
KMAEGTSNEKEVTVREGSTNAIESPSDKSKLAYGGWKVRLGNTTSVQDGERVVVTPTVIFGTLILSTRIYKEKPVATVNN
NAWSENNWQADGWVKVREDLDQNREELPWSGWKEISTNSTSTTSSGDVCTGTVNTSTKMQEREKRVNYETITTYEKVQPS
ENQSSGWILVLNATNGGAVKVSSGTGVDFLGKYDASNFNPNDTAHSNTYFTVGLYSSSGLPNHTLLTNDSNVHSLGSAMT
RDGEARTNGEDGDLTPGGEKAKDDCFNNTDGNYVLTGNTATGIGATFSVVGRRCGKKIQIRRLSWREIF

Nucleotide


Download         Length: 4050 bp        

>NTDB_id=430269 HBA48_RS08010 WP_003789470.1 1538447..1542496(-) (pilC/pilC1) [Kingella kingae strain ATCC 23331]
ATGAGTCTCAAATGTAAAAAATATAATTGCAATCTTAAGCCATTAAGTATAGGGGTATCGCTTGCCTTGTCCAGCTTTGC
GGCAATGGCGGCTGATTCACCATTTGCAATTGCACCACAGCATTTATCCAGTACGGCAACGATACGAAAAACCACAGTAA
CTACGCCGCATACTGATATACATAAACAGCAGCAATCAGTTACTAACACAACGGTGCGTGGCATGCAAGGTGCTAAACCC
AATATTATGCTAGTATTGGACGATTCTGGTAGTATGACTGAACGTGCGGGGAGGAGTACTAGACAACAGATCTTACAAAA
CTCATTAGCTAATATTGTTAAAAAATATAACAATCAAGTAAATTGGGGAATAAAAGCTTTTAATAATACATCGCGTAGAT
ACAGTGTTCCAATCGGAACTGATGCAGATAAAGTTCATTCTTTAATCAAAACATTTCCTGCTGATGGAACTACGCCAACC
ATTACAACTTATATTGAAGCTGCTGATGATTTGAATAAAGCGATTAAGTATCGGTGTCAAAAAAATTATTTGGTTATGGT
ATCTGATGGCGATTCGAATTTCAGTACATATTTACCTGATAATACGGGTGTAGAATACTCTAGGAGAACGTATAATAGAG
GGTTACTTCCTAGCTTTCACTACCCGCAATGGCTAGCGATTAATCAAAAATTAAATGAATTTGACTTTTGGAAAAAAATA
TTTAAATCTAGTGCTTACAATAGGACATATACTAAAAATTCATCAAAATTTTTGTCCATGTGTAATCCGGCATATTTAAC
AGCTCGCTCACCGTACACCAAACAAGCCCAAAAATATGAACAATATATTTGTGACAATTTACCACAGGAGTTTGCTTACT
ATCCGTATAGCGGTATAACCGATGGCTTATTTTATAATTTCTATTATGTGAAAGGGTTGACTCCCATTCAAGGACTTACT
TCTAATTTAGATTTATTAAATAATAGAGAGGTAAAATATCAAAGAACTGGTCAAGCACCTATTTTTCCACTCGCTCATTT
AACAGCATATTCAGGAGATATGTTAGGGTATCTTAGTGAGCCATTATTTCAAACAGATTTACGTACAGCATCTGATGGTA
CTGATGCAGCAGGTAAATCATGGGATAGTAGTGATTTTCCTAATCAAAATATCACTACCTTTACTATTGGCTTTGGAACT
GGTTTAAGTCAATATGGATTAAGTTTATTACAAGGTGGGGCTAGTACTATTCGGATAAAAGACCCTATCACTAAACAAAT
GATTTCGCAAAAAGCCTATTATTCAGCTACTGATGAAAATAGTTTGCAAAAAGCATTTGACTCGATTTTTAACCAAATTG
AACGTGAAAATCCACCACCTAGCAATAGTAACCCTATTGATTTACCTCCCACTACTAATACATTGCCAATTTCTACGCCT
ACAGCAGGTACACCTAATCGCCAGCAAAGTGTGATGGCGGAGACGTCTTATGCCACTTCTCCTCCTAGTGCAACAGGGGC
AAGTAATAGTATTCCTAATATGGCGGCATCGGTGTTTGTCCCTGCAGGGCTAAAAAGTAGCGAATTGCGGTTTTATGCTT
TAAATAGCAAAGCACAAGCGGATACTTCGTCTTGGAGTGTGGCTGATTTTTCGCAACGCAAAGCCTTGATCCGTACAGAT
TCAGGTGTACATTGGGTACGTGATGCCAGCTTGAATAATACGTTCTTTGGGTTGTCTGCTGAGATGCAAACGCCTCAGCG
CACTGATGAGTGGAATAAGGCATTATTGCCTTGGACAACTCGTACTGTTGAAGGCAGCGATGATAGTAAAATTAAAGCGA
TGAATTACCCAACGCCTTATCGTATTCGTCCAATTCCACCTACTGATAGTCCACGTAATACTGTTGTTGATGAATATAAT
ATGGGCGATGTGTTGGATACACCGATTGTAGCGACTGGTAAAAATGGCATTGAGCAAGGTAATCGACAAGAGTTTTTGAT
TACGGCTGCAAATGATGGCATGGTGTACTTGTTCCAAAGTAATCCTGATATCAATGCAAAAAATCCCTATTCATTAAAAT
TAAATTATTTACCTGCGACAATGCCGCGCCAAACATTGACTGATACTCATGCTACTCATTACAAAGATTTGGCACACGAG
GGTTATGCAAAAGATTCTGCGCGTCCACATTTATTTATGATTAATGGTGGTATTACGGTTCGTACGACTTCCGCTAAATC
TAATCGTCAAAACACGTTTATGGTGGGGGCTTTGGGACAAGGCGGACGTGGTATGTACGCACTCAATATTGGCGGTAAGG
CTTTGGATTCTGGTAACGCCATCGGCTTAAATGCCGAAGATAGTACATGGAATACATCCGTGCCTTTATATGAATCTAAT
CCAAATAATAGTACAGATTTTTCTTCATTAGGCTATACCGTTGGTTATCCACAAATTGGTCGTATTGCTAAATATAACAC
TGATGGCTCTTTATCAGACAATAGTTTGAAAACAGGTGTTTATTATGCTTCTTTCTTATCAAGTGGCTTTTCTTCTCTTA
ATGCTAGTCAGGAAACCGCTCTGTATATTCAAGATGCGTTGGGTGTAGATGTTGGTGGTGGTGCTAATACTGCTGCTACA
GCAAATGGCAATACAAAAGGTAAATTATTAGCGAAAGTGGTGGTTCCAGGCGGCGTAGGTGGTTTGGCATCGCCAACATT
ACTTGATGTGAATCGAGATGGTGTGTATGACTTTGTCTTTGCGGGAGATTATGGTGGCAATATGTATCGCTTTGATTTGC
GTAAAATTGATTTGTCTAATGGTACTGTTACCGACGGCGCTGTGAAGAAAATTTATTCTGGTTCTACAACACAACCAATT
ACAAGTGCTCCTGCTATTTCCATGCAAAAAAATGGACGGTATGTTGTGGCATTTGGTACGGGTAGTGATATGTATGCTAG
CGATTATAATTCAACCGCTGAGCAAGCTGTATATGGTATTTATCAACGATTCAACGAGCGTTTGGATCCTATTGATATCA
ATAATCCTACTGCTGCTGAAACTATAACCCCTTTAACAGCTGGTAATTTGTTGGAGCAAACATTAACCACAGCGACTGCC
AAAATGGCAGAGGGTACTTCTAACGAAAAAGAAGTAACTGTTCGTGAAGGCTCAACCAATGCAATTGAAAGTCCTAGTGA
TAAATCAAAATTAGCCTATGGTGGTTGGAAAGTGCGATTAGGTAACACGACATCTGTACAAGATGGTGAACGTGTTGTGG
TTACCCCAACTGTGATTTTTGGTACCTTGATTCTTTCAACTCGCATCTATAAAGAAAAACCAGTTGCTACGGTCAATAAT
AATGCTTGGTCAGAAAATAATTGGCAAGCTGATGGTTGGGTTAAAGTAAGGGAAGATTTAGACCAAAATCGCGAAGAACT
TCCATGGTCTGGTTGGAAAGAAATCAGCACGAACTCAACATCAACCACTAGTTCAGGTGATGTTTGTACGGGTACTGTAA
ATACCAGCACTAAAATGCAAGAGCGCGAAAAAAGGGTTAATTATGAAACGATTACCACTTATGAGAAAGTACAGCCAAGT
GAGAATCAATCATCTGGATGGATTTTGGTATTGAATGCGACCAATGGTGGTGCGGTAAAAGTATCATCTGGTACTGGAGT
TGACTTTTTAGGTAAGTATGATGCTAGTAACTTTAATCCTAATGATACAGCCCATAGTAATACCTATTTTACCGTAGGTT
TGTACTCTTCCAGCGGTTTACCAAATCATACATTATTAACCAATGATTCTAATGTTCATAGTTTAGGTTCTGCGATGACT
CGTGATGGGGAAGCGAGAACCAATGGTGAAGATGGTGATTTAACTCCTGGTGGTGAAAAGGCAAAGGATGATTGCTTTAA
TAATACTGACGGTAACTATGTATTGACAGGTAATACGGCAACAGGAATTGGCGCAACATTTAGCGTTGTTGGTCGTCGTT
GTGGTAAAAAAATACAAATCCGTCGTTTATCTTGGCGTGAGATTTTCTAA

Domains

Predicted by InterproScan.

von Willebrand factor type A domain (VWA_2)

(82-190)

Neisseria PilC beta-propeller domain (T4P_PilY1)

(659-1038)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC/pilC1 Kingella kingae strain KK03

81.3

100

0.835